Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_E14
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.23 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.52 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.69 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.5  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   4.9  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.9  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +1

Query: 526 PPPPPXXXXXXXPXXXXXXXXXXXXPPPPPPXXXXGG 636
           PPPPP       P            PPPPPP     G
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAG 349


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -3

Query: 533 GGGXPPPPXXXFXXXXPPPPP 471
           GG  PPPP        PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP 779



 Score = 29.5 bits (63), Expect = 0.69
 Identities = 16/41 (39%), Positives = 16/41 (39%)
 Frame = +1

Query: 514 GGGXPPPPPXXXXXXXPXXXXXXXXXXXXPPPPPPXXXXGG 636
           GG  PPPPP       P            PPPPPP    GG
Sbjct: 759 GGPPPPPPPPGVAGAGPPP----------PPPPPPAVSAGG 789



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -3

Query: 536 GGGGXPPPPXXXFXXXXPPPPP 471
           GG   PPPP        PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPP 780



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +1

Query: 526 PPPPPXXXXXXXPXXXXXXXXXXXXPPPPPPXXXXGG 636
           PPP P       P            PPPPPP     G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 539 GGGGGXPPPPXXXFXXXXPPPPP 471
           GG    PPPP        PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +2

Query: 527 PPPPPXXXXXXXPXXXXKXXXXXXXPPPPPP 619
           P PPP       P            PPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 718 PPPPPPPP 741
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 720 PPPPPPPP 743
           PPPPPPPP
Sbjct: 775 PPPPPPPP 782



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 718 PPPPPPPP 741
           PPPPPPPP
Sbjct: 776 PPPPPPPP 783


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 14/47 (29%), Positives = 14/47 (29%)
 Frame = +2

Query: 602  PPPPPPXXXXGXXXXXXXXGGGXXXXXXXXXXXXXXXXXPPPPPPPP 742
            PPPPPP                                 PPPPPPPP
Sbjct: 907  PPPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPPPPPP 953


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = -3

Query: 533 GGGXPPPPXXXFXXXXPPPPPXXXFFFXXPPXGXXKK 423
           G   PPPP   F     PPPP        PP G  KK
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPP--------PPPGYVKK 35



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 719 PPPPPPPP 742
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 536 GGGGXPPPPXXXFXXXXPPPPP 471
           G    PPPP        PPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPP 28



 Score = 23.8 bits (49), Expect(2) = 4.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 720 PPPPPPP 740
           PPPPPPP
Sbjct: 24  PPPPPPP 30



 Score = 21.0 bits (42), Expect(2) = 4.3
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 603 PPPPPP 620
           PPPPPP
Sbjct: 9   PPPPPP 14


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 719 PPPPPPPP 742
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 718 PPPPPPPP 741
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197



 Score = 23.8 bits (49), Expect(2) = 3.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 722 PPPPPPP 742
           PPPPPPP
Sbjct: 238 PPPPPPP 244



 Score = 21.4 bits (43), Expect(2) = 3.5
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +2

Query: 563 PXXXXKXXXXXXXPPPPPP 619
           P    K       PPPPPP
Sbjct: 225 PTYTPKQADPLPAPPPPPP 243


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 718 PPPPPPPP 741
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 718 PPPPPPPP 741
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 718  PPPPPPPP 741
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 718 PPPPPPPP 741
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.156    0.583 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,751,232
Number of Sequences: 5004
Number of extensions: 32295
Number of successful extensions: 495
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)