Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_E13
         (983 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.58 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.76 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +1

Query: 535 PPXGGGXXFFXGPPPXPXPLXXXPPLASXPXTXLPXPRGXXSPXPPXPGGA 687
           PP G G      PPP P      PP ++   +    P+G  +P PP P  A
Sbjct: 325 PPIGNGSSNSSLPPPPP------PPRSNAAGSIPLPPQGRSAPPPPPPRSA 369



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
 Frame = +1

Query: 574 PPXPXPLXXXPPLASXPXTXLPXPRGXXSPXP-PXPGGA*P 693
           PP P      PPL +      P P    +P P P P  A P
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.76
 Identities = 18/54 (33%), Positives = 20/54 (37%)
 Frame = +1

Query: 568  GPPPXPXPLXXXPPLASXPXTXLPXPRGXXSPXPPXPGGA*PRYQXFXXWGAPP 729
            G PP P P    PP+        P P    +P  P P  A P        GAPP
Sbjct: 1090 GIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVP--VPSGAPP 1141



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
 Frame = +1

Query: 568  GPPPXPXPLXXXPPL--ASXPXTXLPXPRGXXSPXPPXPGGA*P 693
            G PP P P    PP+   S     +P P     P PP P  A P
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP-PSEAPP 1199



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 574  PPXPXPLXXXPPLASXPXTXLPXPRGXXSPXP 669
            PP P P    P + S P + +P P    SP P
Sbjct: 1237 PPVPAPSSEAPSV-STPRSSVPSPHSNASPSP 1267


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +1

Query: 571  PPPXPXPLXXXPPLA-SXPXTXLPXPRGXXS-PXPPXPGGA*P 693
            PP    P    PP++   P +  P P G  S P PP P  + P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 15/50 (30%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
 Frame = +1

Query: 535 PPXGGGXXFFXGPPPXPXPLXXXPPLASXPXTXLPXP--RGXXSPXPPXP 678
           PP          P P P P+    P+   P    P P   G   P PP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/39 (35%), Positives = 15/39 (38%)
 Frame = +1

Query: 571 PPPXPXPLXXXPPLASXPXTXLPXPRGXXSPXPPXPGGA 687
           PPP P  +   P  A  P        G   P PP PG A
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVA 771


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +1

Query: 589 PLXXXPPLASXPXTXLPXPRGXXSPXPPXP 678
           P    PP A+ P T LP       P PP P
Sbjct: 168 PPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,834,608
Number of Sequences: 5004
Number of extensions: 23076
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)