Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_E12
(938 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 34 0.025
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.058
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.18
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 31 0.23
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.41
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.2
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 1.7
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 27 5.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 6.7
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 6.7
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 26 6.7
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 26 6.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 8.8
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 34.3 bits (75), Expect = 0.025
Identities = 28/72 (38%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Frame = -2
Query: 937 GXGKGXPPPX-GGXGXGXPQXGGGXXXGXPG--GGPRGXXXXXXXPXGGXPPPXGG--GX 773
G G G PPP GG G G G G G GG G GG P GG G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253
Query: 772 FWXXXXG-GGGP 740
F G GGGP
Sbjct: 254 FGGGPGGFGGGP 265
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 614 GGGXXXPPPPXXGXGGFXG 558
GGG PPP G GGF G
Sbjct: 194 GGGSGGPPPGPGGFGGFGG 212
Score = 28.3 bits (60), Expect = 1.7
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Frame = -2
Query: 904 GXGXGXPQXGGGXXXGXPGGGPRGXXXXXXXPXG-GXPPPXGGGXFW 767
G G G + G G G PGG G P G G P GG W
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPGW 273
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.1 bits (72), Expect = 0.058
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +2
Query: 743 PPPPPXXXPKXSPPXGGGXPPXGXXXXPXXPPGXPPRXP 859
PPPPP P+ +P G PP PP PP P
Sbjct: 361 PPPPP---PRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +2
Query: 743 PPPPPXXXPKXSPPXGGGXPPXGXXXXPXXPPGXPPR 853
PPPPP + PP G G P PP PPR
Sbjct: 313 PPPPPSRRNRGKPPIGNG---SSNSSLPPPPP--PPR 344
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 743 PPPPPXXXPKXSPPXGGGXPPXGXXXXPXXPPGXPP 850
PPPPP P+ + PP G P PP P
Sbjct: 337 PPPPPP--PRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +2
Query: 743 PPPPPXXXPKXSPPXGGGXPPXGXXXXPXXPPGXPPRXP 859
PP P P PP P G P PP P P
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = +2
Query: 743 PPPPPXXXPKXSPPXGGGXPPXGXXXXPXXPPGXPPRXP 859
P P P P +PP PP P P PP P
Sbjct: 416 PVPTPPSLPPSAPP---SLPPSAPPSLPMGAPAAPPLPP 451
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.18
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = +3
Query: 780 PPXGGGXPPXGXXXXXXXPRGPPPGXPXXXPPPXWGXPXPXPPXGGGXPFPXP 938
P G PP P PPP P P G P P PP P P P
Sbjct: 1172 PAPSSGIPPV-PKPAAGVPPVPPPSEAPPVPKPSVGVP-PVPPPSTAPPVPTP 1222
Score = 29.5 bits (63), Expect = 0.72
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = +3
Query: 777 PPPXGGGXPPXGXXXXXXXPRGPPPGXPXXXPPPXWGXPXPXPPXGGGXPFPXP 938
P P G PP P P G P P P P P G P P P
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAP--SGAPPVPKP 1164
Score = 29.5 bits (63), Expect = 0.72
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = +3
Query: 777 PPPXGGGXPPXGXXXXXXXPRGPPPGXPXXXPPPXWGXPXPXPPXGGGXPFPXP 938
P P G PP P P P P G P P PP P P P
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVP-PVPPPSEAPPVPKP 1203
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = +3
Query: 777 PPPXGGGXPPXGXXXXXXXPRGPPPGXPXXXPPPXWGXPXPXPPXGGGXPFPXP 938
P P G PP P P G P P P P P G P P P
Sbjct: 1132 PVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP-APSSGIPPVPKP 1184
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/54 (29%), Positives = 16/54 (29%)
Frame = +3
Query: 777 PPPXGGGXPPXGXXXXXXXPRGPPPGXPXXXPPPXWGXPXPXPPXGGGXPFPXP 938
P P PP P PPP P P G P P P P P
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPV-PPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 31.1 bits (67), Expect = 0.23
Identities = 19/46 (41%), Positives = 19/46 (41%)
Frame = -3
Query: 879 GGGGXKXGXRGGXPGGXXGXXXXPXGGXPPPXGGXXFGXXXGGGGG 742
GG G G RGG GG G GG GG G GG GG
Sbjct: 23 GGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGR--GGSSGGRGG 66
Score = 30.7 bits (66), Expect = 0.31
Identities = 19/46 (41%), Positives = 19/46 (41%)
Frame = -3
Query: 879 GGGGXKXGXRGGXPGGXXGXXXXPXGGXPPPXGGXXFGXXXGGGGG 742
GG G G RGG GG G GG GG G GG GG
Sbjct: 16 GGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGR--GGARGGRGG 59
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = -3
Query: 879 GGGGXKXGXRGGXPGGXXGXXXXPXGGXPPPXGGXXFGXXXGGGG 745
GG G G RGG GG G GG GG G G GG
Sbjct: 9 GGRGGSRGGRGGFNGGRGGF----GGGRGGARGGGRGGARGGRGG 49
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect = 0.41
Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Frame = +3
Query: 777 PPPXGGGXPPXGXXXXXXXPRGPPPGXPXXXPPPXWGXPXPXPP--XGGGXPFPXP 938
P P PP P PPPG PPP P P PP GG + P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP----PPPPPPAVSAGGSRYYAP 795
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Frame = +3
Query: 834 PRGPPPGXPXXXPPPXWGXPXPXPP----XGGGXPFPXP 938
P P P P P G P P PP G G P P P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Frame = +3
Query: 837 RGPPPGXPXXXPPPXWGXPXPXPPXG---GGXPFPXP 938
+ PPP P P P P PP GG P P P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 27.5 bits (58), Expect = 2.9
Identities = 16/48 (33%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Frame = +3
Query: 777 PPPXGGGXPPXGXXXXXXXPRGPPPGXPXXXPPPXW----GXPXPXPP 908
PPP P P P G P PPP G P P PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = +2
Query: 743 PPPPPXXXPKXSPPXGGGXPPXGXXXXPXXPPGXPPRXP 859
P P P P +P GG PP P PP P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +2
Query: 743 PPPPPXXXPKXSPPXGGGXPPXGXXXXPXXPPGXP 847
PPPP P +P PP P PP P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Frame = -1
Query: 650 PXGGGXXKXPPPGG--GXXXPPPPXXGXGGFXGG 555
P GG PPP G G PPPP GG
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +2
Query: 749 PPPXXXPKXSPPXGGGXPPXGXXXXPXXPPGXPP 850
PP P PP PP P PP PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +3
Query: 834 PRGPPPGXPXXXPPPXWGXPXPXPPXGGGXPFP 932
P PP P PP P P PP P P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPP 1718
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/49 (30%), Positives = 15/49 (30%), Gaps = 2/49 (4%)
Frame = +3
Query: 777 PPPXGGGXPPXGXXXXXXXPRGPP--PGXPXXXPPPXWGXPXPXPPXGG 917
PP PP P PP G P PPP P P G
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Frame = +3
Query: 834 PRGPPPGXPXXXPPPXWGXPXP-XPPXGGGXPFP 932
P PPP P PPP P P PP P P
Sbjct: 1705 PTPPPP--PMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Frame = +2
Query: 743 PPPPPXXXPKXSPPXG---GGXPPXGXXXXPXXPPGXP 847
PPPPP PK PP PP G G P
Sbjct: 1883 PPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNP 1920
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +3
Query: 834 PRGPPPGXPXXXPPPXWGXPXPXPPXGGGXPFP 932
P P P P PP P P P G P P
Sbjct: 110 PNEPVPEEPLPGEPPLPDEPVPEEPLPGEPPLP 142
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 846 PPGXPXXXPPPXWGXPXPXPP 908
PPG P PPP P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPP 25
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 728 GXXXXPPPPPXXXPKXSPPXGGGXPPXG 811
G PPPPP P PP PP G
Sbjct: 7 GNPPPPPPPPGFEPPSQPPP---PPPPG 31
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = -3
Query: 876 GGGXKXGXRGGXPGGXXGXXXXPXGGXPPPXGGXXFGXXXGGGGG 742
G G + G RGG G G GG G G GG G
Sbjct: 136 GRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRG 180
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/37 (32%), Positives = 14/37 (37%)
Frame = +2
Query: 680 GXXXGXXPXXXGGVWGGXXXXPPPPPXXXPKXSPPXG 790
G G P G G PPPP + +PP G
Sbjct: 107 GIPLGQAPVGLAGPVRGVGYTAPPPPAGFGRGAPPPG 143
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -2
Query: 931 GKGXPPPXGGXGXGXPQXGGGXXXGXPGGGPRG 833
G PPP G G P G G G PG GP G
Sbjct: 72 GNAAPPPPG--AEGGPGAGFG---GFPGAGPGG 99
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 8.8
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Frame = +2
Query: 743 PPPP--PXXXPKXSPPXGGGXPPXGXXXXPXXPPGXPPRXP 859
PP P P P +PP PP P P P + P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184
Score = 25.8 bits (54), Expect = 8.8
Identities = 13/42 (30%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Frame = +2
Query: 743 PPPPPXXXP---KXSPPXGGGXPPXGXXXXPXXPPGXPPRXP 859
PPP P P +PP PP P P P P
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,040,912
Number of Sequences: 5004
Number of extensions: 31321
Number of successful extensions: 204
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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