Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_E07
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    33   0.071
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    31   0.28 
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    27   3.5  
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    27   4.6  
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    26   8.1  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    26   8.1  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    26   8.1  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    26   8.1  

>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 32.7 bits (71), Expect = 0.071
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +3

Query: 444 FSSPWPTLAACVCYAYCAKELGPKLMANRKPFELRNILVVYNMAQTIFSA 593
           FSS  P +A  +   Y    +G ++M NR+P  L+ I   YN+  +I SA
Sbjct: 32  FSSA-PVVATIIISYYLLILVGGRIMRNRQPIRLQKIFQYYNLTFSIASA 80


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 435 GREFSSPWPTLAACVCYAYCAKELGPKLMANRKPFELRNILVVYNMAQTIFS 590
           G+   S W ++   +   Y     G  +M NRKP + R +  ++N   TI S
Sbjct: 48  GKTPMSQWSSVIVSITAYYVIILSGRAIMTNRKPLKQRRLFQLHNFILTIIS 99


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 456 TAMKILG--QSFTRGSPLLSIKSLYQLETVAIFVSYHQLLYRTI*YHRKTG 310
           T M +L   + +TR S  L+  S+Y +  +A+ + Y     RTI   RKTG
Sbjct: 386 TQMSVLSMWEIYTRDSSALAFLSMYVIVDMAVLLCY--AFVRTIQIIRKTG 434


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 483 YAYCAKELGPKLMANRKPFELRNILVVYNMAQTIFSAWI 599
           +A  A    P   + +  F L+NI+V+ N    ++ AWI
Sbjct: 12  FAVFASSDKPNNCSRKNMFFLKNIIVLSNYLYLLYKAWI 50


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 109 LKQYILGKTSVSYFITXISHQXXGSYSNRRF 201
           LK Y+ G T++ +F+T   +   G +  + F
Sbjct: 214 LKDYVRGTTTIQHFLTYADNYAIGYFKKQGF 244


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +3

Query: 531 KPFELRNILVVYNMAQTIFSAWIFYEYLMSGWWGHY-DFRVSTGRLLSE 674
           KPF   + +  Y +    F  W+ Y+++    W  Y D     GR + E
Sbjct: 460 KPFAAGDFVDAYILLPLFFVIWLSYKFIKKTKWVSYEDMDFINGRRVIE 508


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 440 RIFIAVANPSRVRVLRILREGAWPQTYGQSKTIRTSKYSRRLQHGSDYLQ 589
           R+  +  N     + +IL +G W   Y  SKT     +S+ L   +D+L+
Sbjct: 303 RLLPSDPNVEMPMIPQILEKGLWVSKYAPSKTQDCCAFSQCLSKIADWLR 352


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +1

Query: 682 AMXMANTCWWYYFSKFTEXMDTPFLCATEXXRXRVTL 792
           A+ + + C+  +F K+T+ M + F C+    +  + L
Sbjct: 10  ALNVVDQCFKTFFDKYTDRMGSAFACSGTIDKDHIFL 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,150,727
Number of Sequences: 5004
Number of extensions: 60555
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)