Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_E06
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.60 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.60 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.4  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   9.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 761 PPPPPPPXXXXXXXPPP 811
           PPPPPPP       PPP
Sbjct: 10  PPPPPPPGFEPPSQPPP 26



 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 714 PPXPXFXXGXXXXKKXPPPPPP 779
           PP P    G     + PPPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 762 PPPPPPXXXXXKXXPPP 812
           PPPPPP        PPP
Sbjct: 11  PPPPPPGFEPPSQPPPP 27



 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 761 PPPPPPPXXXXXXXPPP 811
           PPPPPPP        PP
Sbjct: 9   PPPPPPPPGFEPPSQPP 25



 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +1

Query: 715 PPPXXSXXXXXXXKKXPPPPPP 780
           PPP           + PPPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 14/45 (31%), Positives = 14/45 (31%)
 Frame = +3

Query: 678 PPPXXXXXXXXXPPXPXFXXGXXXXKKXPPPPPPXXXXXKXXPPP 812
           PPP          P P            PPPPPP        PPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +2

Query: 662 PXXXXXPPXXXXXXXXXPPXPXFLRGXXXXXKXPPPPPPP 781
           P     PP         PP P    G       PPPPPPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPP--PGVAGAGPPPPPPPPP 783



 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
 Frame = +2

Query: 470 PPAPSXLSXKPQXGPXPFPXKGXXF--PPXPPXNXG 571
           PP P+ +   P   P P P        PP PP   G
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769



 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +2

Query: 713 PPXPXFLRGXXXXXKXPPPPPPPXXXXXXXPPP 811
           PP P  +         P PPP P       PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
 Frame = +1

Query: 715 PPPXX--SXXXXXXXKKXPPPPPPXXXXXXXXPP 810
           PPP    S       KK PPPPPP        PP
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPP 326



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 753 KKXPPPPPPXXXXXKXXPP 809
           KK PPPPPP     +  PP
Sbjct: 308 KKRPPPPPPPSRRNRGKPP 326



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/45 (33%), Positives = 17/45 (37%)
 Frame = +2

Query: 449 GSXDXXDPPAPSXLSXKPQXGPXPFPXKGXXFPPXPPXNXGEKTG 583
           GS +   PP P         G  P P +G   PP PP      TG
Sbjct: 330 GSSNSSLPPPPPP-PRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 21/86 (24%), Positives = 25/86 (29%)
 Frame = +3

Query: 555 PPXIXGKKPGXXQKIXGPKSXREKKTPF*TPXXXXXPXXXXPPPXXXXXXXXXPPXPXFX 734
           PP     KPG  + +  P    E       P     P    PPP          P P   
Sbjct: 208 PPPPMHHKPG--EHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMH 265

Query: 735 XGXXXXKKXPPPPPPXXXXXKXXPPP 812
                  +  PPPP      +  PPP
Sbjct: 266 HEPG---EHMPPPPMHHEPGEHMPPP 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,773,099
Number of Sequences: 5004
Number of extensions: 24297
Number of successful extensions: 235
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)