Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_E03
(925 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 62 1e-10
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 27 3.7
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 27 3.7
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 27 4.9
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.9
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p... 26 6.5
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 26 8.6
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 26 8.6
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 8.6
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 26 8.6
>SPCC622.12c |||NADP-specific glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 451
Score = 62.1 bits (144), Expect = 1e-10
Identities = 32/105 (30%), Positives = 53/105 (50%)
Frame = +3
Query: 501 ILKLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKAL 680
+L ++ + +LE + D G+ + GYR Q ++ P KGG+RF V +K L
Sbjct: 35 VLPIISIPERVLEFRVTWEDDKGNCRVNTGYRVQFNSALGPYKGGLRFHPSVNLSILKFL 94
Query: 681 SALMTFKCACVDVPFGGAKXGIKINPKEYSEHELEKITRRFTLEL 815
FK A +P GG K G +PK S++E+ + ++ F +L
Sbjct: 95 GFEQIFKNALTGLPMGGGKGGSDFDPKGKSDNEIRRFSQAFMRQL 139
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = +2
Query: 749 DQSQRILRA*TGKDHSSFHP*TCQKRIHWAWRGCXRSWRGYRR 877
D+ R+ R D FHP C I + + C W G+ +
Sbjct: 5 DEICRVCRCEGAPDSPLFHPCKCTGSIRYVHQECLVEWLGHSK 47
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 27.1 bits (57), Expect = 3.7
Identities = 20/44 (45%), Positives = 22/44 (50%)
Frame = +3
Query: 618 TPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKXGIK 749
TPT G ST +T V+ALS L ACV P G GIK
Sbjct: 372 TPTPFGEGKST-LTAGLVQALSNLDKLAIACVRQPSQGPTFGIK 414
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2
Query: 812 TCQKRIHWAWRG 847
TC +R+ WAWRG
Sbjct: 662 TCDRRMVWAWRG 673
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +3
Query: 522 CDHILEIQFPLRR 560
CDHI+ +Q+PL+R
Sbjct: 120 CDHIVNLQYPLKR 132
>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 202
Score = 26.2 bits (55), Expect = 6.5
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = -2
Query: 597 RDSLISFRNRQNRASEEIESQECDRMVP*VLEYRLLSFSSLQWVSLTSNLQQACLRQLDR 418
R+SL +N + AS+ + Q+ +L + S + + + NL+ LRQ
Sbjct: 45 RESLGILQNVTHEASQPFQPQDHPSEAAALLMFHSSSIYNKRCLMAYHNLRLQRLRQYCW 104
Query: 417 LGGKNILPCGRTS-DSHL*EYL*AYLE 340
GGK + C TS ++ +YL Y E
Sbjct: 105 SGGKRMESCLDTSLSTYERDYLTRYSE 131
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 8.6
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +3
Query: 633 GIRFSTDVTRDEVKALSALMTFKCAC-----VDVPFGGAKXGIKINPKEY-SEHELEKIT 794
GIR T +TR ++A +L+ C C VD+ F A+ GI + Y + + ++
Sbjct: 102 GIRSKTRLTRRVLEAADSLIVIGCFCIGTNQVDLDF-AAERGIAVFNSPYANSRSVAELV 160
Query: 795 RRFTLELAKK 824
+ + LA++
Sbjct: 161 IGYIISLARQ 170
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 25.8 bits (54), Expect = 8.6
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +1
Query: 793 LVVSPLNLP--KKDSLGLAWMXPLL 861
L V PLNL KD++G AW+ P+L
Sbjct: 444 LRVLPLNLELNDKDAVGRAWLLPVL 468
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 8.6
Identities = 22/76 (28%), Positives = 34/76 (44%)
Frame = +3
Query: 258 QNEALNTMFRIIPAGVNVCCRTYASHEIPDKLKDIPTSANPKFFHMVEYFFHRACQVVED 437
QN+++N R+I ++ R Y IP +D A H E F+ R Q
Sbjct: 667 QNKSMNERLRVIGKRIDHLERAYRREAIPLWEEDAKQQAE----HDREIFYEREKQ---R 719
Query: 438 KLVEDLKSRTPIEEKK 485
K V++ K I++KK
Sbjct: 720 KEVQERKHEQAIKDKK 735
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -2
Query: 600 VRDSLISFRNRQNRASEEIES-QECDRMVP*VLEYRLLSFSSLQWVSLTSNLQQACLRQ 427
++D + + + + + EIES + + + EYR LS + + VSL S + Q R+
Sbjct: 287 IKDYVSHLQTKSTKKASEIESIADMKQFLEAYPEYRRLSGNVSKHVSLVSEISQVVQRE 345
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,631,073
Number of Sequences: 5004
Number of extensions: 76631
Number of successful extensions: 217
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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