Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_E03
(925 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0144 + 26258841-26258948,26259099-26259212,26259335-262595... 90 2e-18
04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093... 89 6e-18
03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259... 88 1e-17
01_05_0337 + 21115388-21115961,21116471-21116597,21116683-211168... 55 7e-08
10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454 30 2.3
11_06_0074 - 19821699-19823702 29 6.9
11_01_0311 + 2322511-2323527 28 9.1
04_04_0498 - 25654988-25655168,25658149-25658257,25658376-256584... 28 9.1
01_01_0104 + 780442-781273,782514-783424 28 9.1
>02_05_0144 +
26258841-26258948,26259099-26259212,26259335-26259556,
26259660-26259734,26259827-26259943,26260046-26260296,
26260833-26260908,26261045-26261131,26261216-26261401
Length = 411
Score = 90.2 bits (214), Expect = 2e-18
Identities = 42/94 (44%), Positives = 59/94 (62%)
Frame = +3
Query: 534 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACV 713
++++ + +D G +G+R QH R P KGGIR+ +V DEV AL+ LMT+K A
Sbjct: 35 IKVECTIPKDDGTLATFVGFRVQHDNSRGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA 94
Query: 714 DVPFGGAKXGIKINPKEYSEHELEKITRRFTLEL 815
VP+GGAK GI P E S ELE++TR FT ++
Sbjct: 95 AVPYGGAKGGIGCTPGELSRSELERLTRVFTQKI 128
>04_04_0678 +
27207340-27207447,27207555-27207668,27209111-27209332,
27209407-27209481,27209569-27209685,27210145-27210395,
27210686-27210761,27210862-27210948,27211037-27211222
Length = 411
Score = 88.6 bits (210), Expect = 6e-18
Identities = 41/94 (43%), Positives = 59/94 (62%)
Frame = +3
Query: 534 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACV 713
++++ + +D G +G+R QH R P KGGIR+ +V DEV AL+ LMT+K A
Sbjct: 35 IKVECTIPKDDGTLASFIGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA 94
Query: 714 DVPFGGAKXGIKINPKEYSEHELEKITRRFTLEL 815
+P+GGAK GI P E S ELE++TR FT ++
Sbjct: 95 AIPYGGAKGGIGCAPGELSTSELERLTRVFTQKI 128
>03_06_0282 -
32824950-32825135,32825247-32825505,32825651-32825901,
32826309-32826425,32826613-32826687,32826788-32827009,
32827396-32827509,32827694-32827801
Length = 443
Score = 87.8 bits (208), Expect = 1e-17
Identities = 40/94 (42%), Positives = 61/94 (64%)
Frame = +3
Query: 534 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACV 713
++++ + +D G +G+R QH R P KGGIR+ +V DEV AL+ LMT+K A
Sbjct: 35 IKVECTIPKDDGTLASYVGFRVQHDNARGPMKGGIRYHHEVDPDEVNALAQLMTWKTAVA 94
Query: 714 DVPFGGAKXGIKINPKEYSEHELEKITRRFTLEL 815
++P+GGAK GI +P + S ELE++TR FT ++
Sbjct: 95 NIPYGGAKGGIGCSPGDLSISELERLTRVFTQKI 128
>01_05_0337 +
21115388-21115961,21116471-21116597,21116683-21116884,
21117460-21117546,21117622-21117681,21117800-21117886,
21118451-21118522,21118675-21118730,21118812-21118897,
21119427-21119517,21119593-21119750,21119827-21119918,
21120110-21120190,21120282-21120479
Length = 656
Score = 55.2 bits (127), Expect = 7e-08
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Frame = +3
Query: 447 EDLKSRTPIEEKKKKVAGIL-KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTP 623
E + S P+ K + IL +L+EP + + P D G+ + G+R Q S P
Sbjct: 220 EVVHSLEPVLVKNSQHVQILERLLEP-ERCFIFRVPWVDDRGEAHVNRGFRVQFSQALGP 278
Query: 624 TKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKXGIKINPKEYSEHELEKITRRF 803
+GG+RF +T K L+ T K A GGA G +PK SE E+ + + F
Sbjct: 279 CRGGLRFHPSMTLSVAKFLAFEQTLKNALSQYKLGGAAGGSDFDPKGKSESEIMRFCQSF 338
Query: 804 TLEL 815
EL
Sbjct: 339 MDEL 342
>10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454
Length = 748
Score = 30.3 bits (65), Expect = 2.3
Identities = 20/88 (22%), Positives = 37/88 (42%)
Frame = +3
Query: 390 HMVEYFFHRACQVVEDKLVEDLKSRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSG 569
H F + V ED + + + +E K+KV + E + ++ ++ + G
Sbjct: 642 HSGRAMFDKEIAVEEDIFILEEIGKLAMECLKEKVEERPDMKEVAERLVMLRRARKHGQG 701
Query: 570 DYEMILGYRAQHSTHRTPTKGGIRFSTD 653
Y + + + S TPT G FST+
Sbjct: 702 SYNLSPRHHEEISIETTPTSFGADFSTN 729
>11_06_0074 - 19821699-19823702
Length = 667
Score = 28.7 bits (61), Expect = 6.9
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 753 NPKEYSEHELEKITRRFTLELAKKGF 830
N + ++EH++EKIT ++ + K GF
Sbjct: 27 NIRSFTEHDIEKITSNYSTLIGKGGF 52
>11_01_0311 + 2322511-2323527
Length = 338
Score = 28.3 bits (60), Expect = 9.1
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 694 PSSARAWTCLSAVLRXVSRSIPKNTPSMNWKRSLVVSPL-NLPKKDSLGLAWMXPLLAWV 870
PSS R TC S+ S S P + +++++ +L+ +P L + + G + + P L++
Sbjct: 36 PSSTRVSTCSSSSSTTASSSSPTLSVTVSYRATLLAAPAPPLQLRLTWGHSPLGPTLSFA 95
Query: 871 PA 876
P+
Sbjct: 96 PS 97
>04_04_0498 -
25654988-25655168,25658149-25658257,25658376-25658478,
25658634-25658883,25659011-25659126,25659332-25659587,
25659713-25659800,25659951-25660025,25660143-25660218,
25660308-25660366,25660972-25661038,25668502-25668810
Length = 562
Score = 28.3 bits (60), Expect = 9.1
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 839 WRGCXRSWRGYRRTK 883
WR C WRG RRTK
Sbjct: 57 WRSCWWVWRGLRRTK 71
>01_01_0104 + 780442-781273,782514-783424
Length = 580
Score = 28.3 bits (60), Expect = 9.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 756 PKEYSEHELEKITRRFTLELAKKGF 830
P YS +++KITRRF +L + GF
Sbjct: 324 PTRYSFSDVKKITRRFKEQLGQGGF 348
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,696,268
Number of Sequences: 37544
Number of extensions: 493654
Number of successful extensions: 1172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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