Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_E01
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.53 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.9  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 18/68 (26%), Positives = 20/68 (29%)
 Frame = +2

Query: 644  PKXPXKXPXPXRGPXXXFXXKGPPPPKKXXKXXPPXFXGGATPPXIXKXXGGXPPXKTPP 823
            P      P P           G PP  K     PP     +  P + K   G PP   P 
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPS 1195

Query: 824  XXPPFFXP 847
              PP   P
Sbjct: 1196 EAPPVPKP 1203



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 27/107 (25%), Positives = 28/107 (26%)
 Frame = +2

Query: 527  PXKXPXXPGFXGGGXXFPPXXGXXXXPXXFGEXPXKXFXPKXPXKXPXPXRGPXXXFXXK 706
            P   P  P    G    PP       P    E P     P      P P   P       
Sbjct: 1046 PTSTPPVPKSSSGAPSAPPPV-----PAPSSEIPSIP-APSGAPPVPAPSGIPPVPKPSV 1099

Query: 707  GPPPPKKXXKXXPPXFXGGATPPXIXKXXGGXPPXKTPPXXPPFFXP 847
              PP  K     PP       PP + K     PP   P   PP   P
Sbjct: 1100 AAPPVPKPSVAVPPVPAPSGAPP-VPKPSVAAPPVPVPSGAPPVPKP 1145


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -1

Query: 583 GGKXPXPPPKPXGXGXFXGGXGXG 512
           GG    PPP P G G F G  G G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEG 217


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/37 (32%), Positives = 13/37 (35%)
 Frame = +1

Query: 712 PPPKKXXXKXPPPXLXGGXPPPXXKXXRGXPPXKNPP 822
           P P       P P + G  PPP      G  P   PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +1

Query: 736 KXPPPXLXGGXPPPXXKXXRGXPPXKNPPXXXPLFXPP 849
           K PPP      PPP  +  RG PP  N      L  PP
Sbjct: 309 KRPPP------PPPPSRRNRGKPPIGNGSSNSSLPPPP 340



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 18/68 (26%), Positives = 19/68 (27%)
 Frame = +2

Query: 644 PKXPXKXPXPXRGPXXXFXXKGPPPPKKXXKXXPPXFXGGATPPXIXKXXGGXPPXKTPP 823
           P  P   P   R P      +    P       P      A PP         PP  TPP
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGR-SAPALPPLGNASRTSTPPVPTPP 421

Query: 824 XXPPFFXP 847
             PP   P
Sbjct: 422 SLPPSAPP 429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,857,926
Number of Sequences: 5004
Number of extensions: 25316
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)