Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_D23
(1020 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0610 - 25449085-25453284 35 0.12
04_03_0904 + 20717005-20718087 32 0.85
05_03_0040 - 7646525-7647775 31 1.5
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 31 1.5
07_03_0091 + 13312904-13313647 30 3.4
07_03_0089 - 13300902-13301645 30 3.4
08_01_0059 - 394001-394708 29 4.5
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 4.5
03_01_0515 - 3864796-3865425 29 4.5
05_03_0039 - 7621613-7622695 29 7.9
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 34.7 bits (76), Expect = 0.12
Identities = 22/81 (27%), Positives = 26/81 (32%), Gaps = 3/81 (3%)
Frame = +2
Query: 770 PXAPPXXSPSPXTRMXXDPRNGXXXPXXPXXXPXLGPRXXPESXRGXXPXXXXA---PTP 940
P A P SP P + P P P P+ P + A PTP
Sbjct: 541 PPATPESSPPPEGKSPPTPTASHSPPPVPEGHTPSPPKSGPPAGESPPTPESKASPPPTP 600
Query: 941 XEXXPXPXXSRXPXHXARPPP 1003
E P P S P + P P
Sbjct: 601 EEYTPSPPKSTPPAEKSPPTP 621
>04_03_0904 + 20717005-20718087
Length = 360
Score = 31.9 bits (69), Expect = 0.85
Identities = 21/78 (26%), Positives = 27/78 (34%)
Frame = +2
Query: 770 PXAPPXXSPSPXTRMXXDPRNGXXXPXXPXXXPXLGPRXXPESXRGXXPXXXXAPTPXEX 949
P PP P+P T P+ P P P P P + P PTP
Sbjct: 236 PNPPPTYKPAPPT---YKPQPKPNPP--PTYKPQPKPTPTPYTPPTYKPQPKPTPTPTPY 290
Query: 950 XPXPXXSRXPXHXARPPP 1003
P P + P + +P P
Sbjct: 291 TPTPKPNPPPTYKPQPKP 308
>05_03_0040 - 7646525-7647775
Length = 416
Score = 31.1 bits (67), Expect = 1.5
Identities = 20/78 (25%), Positives = 22/78 (28%)
Frame = +2
Query: 770 PXAPPXXSPSPXTRMXXDPRNGXXXPXXPXXXPXLGPRXXPESXRGXXPXXXXAPTPXEX 949
P P P P DP+ P P P PE P P P E
Sbjct: 320 PKPEPKPEPKPYPEPKPDPKPEPKPHPEPKPEPKPQPEPKPEPKPEPKPEPKPEPKP-EP 378
Query: 950 XPXPXXSRXPXHXARPPP 1003
P P P +P P
Sbjct: 379 KPYPEPKPEPKPKPKPEP 396
>01_03_0117 + 12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 31.1 bits (67), Expect = 1.5
Identities = 21/78 (26%), Positives = 24/78 (30%)
Frame = +2
Query: 770 PXAPPXXSPSPXTRMXXDPRNGXXXPXXPXXXPXLGPRXXPESXRGXXPXXXXAPTPXEX 949
P PP P P PR+ P P P P + R P P P
Sbjct: 193 PSLPPAEPPVPSPSPEHPPRHSPSKP------PAYAPAKPPTALRPAIPPAAM-PKPPSV 245
Query: 950 XPXPXXSRXPXHXARPPP 1003
P R P +PPP
Sbjct: 246 APVQPPQRPPAPATKPPP 263
>07_03_0091 + 13312904-13313647
Length = 247
Score = 29.9 bits (64), Expect = 3.4
Identities = 19/78 (24%), Positives = 24/78 (30%)
Frame = +2
Query: 770 PXAPPXXSPSPXTRMXXDPRNGXXXPXXPXXXPXLGPRXXPESXRGXXPXXXXAPTPXEX 949
P P P+P DP+ P P+ PE P P P E
Sbjct: 142 PNPQPNPKPTPQLDPKQDPQPNPQPSPKADPKPNPKPKPQPEPSPNPKPEPKPEPKP-EP 200
Query: 950 XPXPXXSRXPXHXARPPP 1003
P P + P +P P
Sbjct: 201 SPNPKPNPNPKPEPQPDP 218
>07_03_0089 - 13300902-13301645
Length = 247
Score = 29.9 bits (64), Expect = 3.4
Identities = 18/78 (23%), Positives = 24/78 (30%)
Frame = +2
Query: 770 PXAPPXXSPSPXTRMXXDPRNGXXXPXXPXXXPXLGPRXXPESXRGXXPXXXXAPTPXEX 949
P P P+P DP+ P P P P+ + P P P
Sbjct: 74 PSPQPDPKPTPQPEPKQDPKPNPQPDPKPSPQPDPKPTPQPDPKQDPQPNPQPDPKP--- 130
Query: 950 XPXPXXSRXPXHXARPPP 1003
P P + P +P P
Sbjct: 131 TPQPNPKQDPQPNPQPDP 148
Score = 29.9 bits (64), Expect = 3.4
Identities = 19/78 (24%), Positives = 24/78 (30%)
Frame = +2
Query: 770 PXAPPXXSPSPXTRMXXDPRNGXXXPXXPXXXPXLGPRXXPESXRGXXPXXXXAPTPXEX 949
P P P+P DP+ P P+ PE P P P E
Sbjct: 142 PNPQPDPKPTPQPDPKQDPQPNPQPSPKADPKPNPKPKPQPEPSPNPKPEPKPEPKP-EP 200
Query: 950 XPXPXXSRXPXHXARPPP 1003
P P + P +P P
Sbjct: 201 SPNPKPNPNPKPEPQPDP 218
>08_01_0059 - 394001-394708
Length = 235
Score = 29.5 bits (63), Expect = 4.5
Identities = 21/78 (26%), Positives = 22/78 (28%)
Frame = +2
Query: 770 PXAPPXXSPSPXTRMXXDPRNGXXXPXXPXXXPXLGPRXXPESXRGXXPXXXXAPTPXEX 949
P PP +P P PR P P P P P P AP P
Sbjct: 3 PPPPPRRAPPPPATPPPPPRRAPPPPSPPIRPP---PPPTPRPYAPPPPSHPLAPPPPHI 59
Query: 950 XPXPXXSRXPXHXARPPP 1003
P P PPP
Sbjct: 60 SPPAPVPPPP----SPPP 73
>03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 29.5 bits (63), Expect = 4.5
Identities = 19/76 (25%), Positives = 21/76 (27%)
Frame = +2
Query: 776 APPXXSPSPXTRMXXDPRNGXXXPXXPXXXPXLGPRXXPESXRGXXPXXXXAPTPXEXXP 955
APP +P P PR P P P P P P P
Sbjct: 306 APP--APPPARSRRTPPRTRFSTGSTPDTKQVTSPSPRPVQPSNAPPPPPPPPPPPPPPP 363
Query: 956 XPXXSRXPXHXARPPP 1003
P + P PPP
Sbjct: 364 PPKLNTAPKPPPPPPP 379
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.5 bits (63), Expect = 4.5
Identities = 21/78 (26%), Positives = 26/78 (33%)
Frame = +2
Query: 770 PXAPPXXSPSPXTRMXXDPRNGXXXPXXPXXXPXLGPRXXPESXRGXXPXXXXAPTPXEX 949
P +PP + P P + P P P + P P S P P P
Sbjct: 39 PPSPPTEASPPP---LAPPPSVTSSPPPPAAGPLMPPPPPPPSVTSSPPPPPLPPPP--- 92
Query: 950 XPXPXXSRXPXHXARPPP 1003
P P S P + PPP
Sbjct: 93 -PPPAASPPPPPPSPPPP 109
>05_03_0039 - 7621613-7622695
Length = 360
Score = 28.7 bits (61), Expect = 7.9
Identities = 18/78 (23%), Positives = 22/78 (28%)
Frame = +2
Query: 770 PXAPPXXSPSPXTRMXXDPRNGXXXPXXPXXXPXLGPRXXPESXRGXXPXXXXAPTPXEX 949
P P P P + P+ P P GP+ P+ P P P
Sbjct: 248 PKPEPKPEPKPEPKPYPKPKPEPKPVPKPKPIPHPGPKPKPKPDPKLEPKPHPEPKP-HP 306
Query: 950 XPXPXXSRXPXHXARPPP 1003
P P P P P
Sbjct: 307 MPEPEPKPKPEPKPEPKP 324
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,392,709
Number of Sequences: 37544
Number of extensions: 236242
Number of successful extensions: 667
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 3010688180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -