Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_D21
(971 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.046
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.57
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.99
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 1.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.0
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 26 9.2
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 9.2
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 33.5 bits (73), Expect = 0.046
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 641 PPXXXXPPPAPPARXXXPXXLPXIPTXXPPXPXP 742
PP PPP+P + P P IP+ PP P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
Score = 31.5 bits (68), Expect = 0.19
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +2
Query: 623 PXXXPXPPXXXXPPPAPPARXXXPXXLPXIPTXXPPXPXPRXXP 754
P P P PP P A P P +P+ PP P P+ P
Sbjct: 161 PSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP-PKVPP 203
Score = 30.3 bits (65), Expect = 0.43
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = +2
Query: 623 PXXXPXPPXXXXPPPAPPARXXXPXXLPXIPTXXPPXP 736
P P P P +PP+ P +P +P PP P
Sbjct: 168 PSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
Score = 25.8 bits (54), Expect = 9.2
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = +2
Query: 662 PPAPPARXXXPXXLPXIPTXXPPXPXPRXXP 754
PP P P P IP+ PP P P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.57
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Frame = +2
Query: 659 PPPAPPARXXXPXXLPXIPTXX--PPXPXPRXXP 754
PPP PP R +P P PP P PR P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Score = 29.1 bits (62), Expect = 0.99
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +2
Query: 623 PXXXPXPPXXXXPPPAPPARXXXPXXLPXIPTXXPPXPXP 742
P P PP PP P P P P PP P P
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPA-PPPAPAP 482
Score = 28.3 bits (60), Expect = 1.7
Identities = 17/63 (26%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Frame = +2
Query: 623 PXXXPXPPXXXXPPPAPPARXXXPXXLPXIPTXXP-PXPXPRXXPXXXXXXGXATXXXPX 799
P P PP APP+ P +P P P P P A P
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPA 479
Query: 800 PXP 808
P P
Sbjct: 480 PAP 482
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +2
Query: 641 PPXXXXPPPAPPARXXXPXXLPXIPTXXPPXPXPRXXP 754
PP P APP P P P P P P P
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 0.99
Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Frame = +2
Query: 641 PPXXXXP-PPAPPARXXXPXXLPXIPTXXPPXPXP 742
PP P PP PP P P +P P P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 26.2 bits (55), Expect = 7.0
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Frame = +2
Query: 635 PXPPXXXXPPPAPPARXXXPXXLPXIP---TXXPPXPXP 742
P PP PPP+ P P P P + P P P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +2
Query: 662 PPAPPARXXXPXXLPXIPTXXPPXPXPRXXPXXXXXXGXATXXXPXPXP 808
PP PP P P PP P P G A P P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 635 PXPPXXXXPPPAPPARXXXPXXLPXIPTXXPPXPXP 742
P PP P PAP A P P + PP P P
Sbjct: 734 PPPPAVIVPTPAP-APIPVPPPAPIMGGPPPPPPPP 768
Score = 26.2 bits (55), Expect = 7.0
Identities = 17/57 (29%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Frame = +2
Query: 635 PXPPXXXXPPPAP-PARXXXPXXLPXIPTXXPPXPXPRXXPXXXXXXGXATXXXPXP 802
P P PPPAP P P + PP P P P G + P P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP---PPPAVSAGGSRYYAPAP 797
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 3.0
Identities = 22/91 (24%), Positives = 24/91 (26%)
Frame = +2
Query: 635 PXPPXXXXPPPAPPARXXXPXXLPXIPTXXPPXPXPRXXPXXXXXXGXATXXXPXPXPXX 814
P P PP P P P + PP P P P A P P
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAA--PPVPVPSGAP-PVPKPSVAAPPVPAPSGAP 1159
Query: 815 GVXXPHXXXRXVXXPPSXVXXAXNXAXXXSP 907
V P V P S + A P
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
Score = 27.1 bits (57), Expect = 4.0
Identities = 22/81 (27%), Positives = 24/81 (29%), Gaps = 5/81 (6%)
Frame = +2
Query: 635 PXPPXXXXPP-PAPPARXXXPXXLPXIPTXXPPXPXP-RXXPXXXXXXGXATXXXP---X 799
P P PP P P + P P+ PP P P P G P
Sbjct: 1033 PIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIP 1092
Query: 800 PXPXXGVXXPHXXXRXVXXPP 862
P P V P V PP
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPP 1113
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 9.2
Identities = 12/40 (30%), Positives = 14/40 (35%)
Frame = +2
Query: 635 PXPPXXXXPPPAPPARXXXPXXLPXIPTXXPPXPXPRXXP 754
P P PP PP +P +PT P P P
Sbjct: 347 PTPQVQGSRPPPPPPMPAPIYNVPNVPTVPTVSPNPFLQP 386
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 9.2
Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = -3
Query: 774 PXXXXXXGXXRGXGXGGXWVGXXGXXXGXXX-RAGGAGGGXIXXGGXGXXXG 622
P G RG G GG G G G R GG GG GG G G
Sbjct: 5 PGSRGGRGGSRG-GRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARG 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,245,330
Number of Sequences: 5004
Number of extensions: 10060
Number of successful extensions: 65
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -