Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_D20
         (913 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003145-3|AAB57717.1|  751|Caenorhabditis elegans Cpeb polya bi...    33   0.28 
Z81086-4|CAB03117.1|  342|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1 ...    30   2.0  

>AF003145-3|AAB57717.1|  751|Caenorhabditis elegans Cpeb polya
           binding family protein 3 protein.
          Length = 751

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +2

Query: 461 QFQSSSSTVKGKSTNPNLK-SKLKSNE-NGFVRNEDYPTKESSKGKKINQSTNSKAANIL 634
           ++  S S    +  N N+   KL ++E NGF+R     T  S K  K+++ST S A  +L
Sbjct: 55  KYHKSDSVKPTEEDNMNVGFDKLSTDEKNGFLRKLQMLTVGSKKSSKVDESTPSPANRLL 114

Query: 635 KE 640
           K+
Sbjct: 115 KK 116


>Z81086-4|CAB03117.1|  342|Caenorhabditis elegans Hypothetical
           protein F53B6.4 protein.
          Length = 342

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
 Frame = +2

Query: 320 SKNRRTKSKLSKNLERLFKEGKCRECSVVVTRMDFARILGKFTKVKIQFQSSSSTVKGKS 499
           +KNR+T    +KN  +  K  K  + +   ++   +R   K    K   +SS     GKS
Sbjct: 65  AKNRKTVHAKNKNKNKSSKSAKSSKSTRGASKSGKSRRSSKAKHSKRSSKSSKKGTSGKS 124

Query: 500 TNPNLKSKLKSNENGFVRNEDYPTKESSKGKKINQST--NSKAANILKENNRLKES 661
              + K   KS+++   +     T   S+   ++ +T  + K +N  K + +  +S
Sbjct: 125 GKGSSKRGGKSSKSSKSKKVKTATTSGSQVSTVSAATGVSDKQSNSSKSSRKSSKS 180


>Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical
           protein F42E11.4 protein.
          Length = 250

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 22/99 (22%), Positives = 43/99 (43%)
 Frame = +2

Query: 359 LERLFKEGKCRECSVVVTRMDFARILGKFTKVKIQFQSSSSTVKGKSTNPNLKSKLKSNE 538
           LE ++ +   R C++   + D   I  +      Q     + ++GK   P+LK K+   +
Sbjct: 107 LEAIYNDLFSRLCNLEEEKYDINHITTETETTINQLNIEVNDLRGKFVKPSLK-KVSKYD 165

Query: 539 NGFVRNEDYPTKESSKGKKINQSTNSKAANILKENNRLK 655
           N F +  +   ++ SK  + N  T  K +   +  N+ K
Sbjct: 166 NKFKKMAEAKKEDGSKNLRNNLKTVKKESVFTQIANKKK 204


>AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1
           protein.
          Length = 250

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 22/99 (22%), Positives = 43/99 (43%)
 Frame = +2

Query: 359 LERLFKEGKCRECSVVVTRMDFARILGKFTKVKIQFQSSSSTVKGKSTNPNLKSKLKSNE 538
           LE ++ +   R C++   + D   I  +      Q     + ++GK   P+LK K+   +
Sbjct: 107 LEAIYNDLFSRLCNLEEEKYDINHITTETETTINQLNIEVNDLRGKFVKPSLK-KVSKYD 165

Query: 539 NGFVRNEDYPTKESSKGKKINQSTNSKAANILKENNRLK 655
           N F +  +   ++ SK  + N  T  K +   +  N+ K
Sbjct: 166 NKFKKMAEAKKEDGSKNLRNNLKTVKKESVFTQIANKKK 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,607,253
Number of Sequences: 27780
Number of extensions: 373089
Number of successful extensions: 1067
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)