Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_D20
         (913 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   5.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   6.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   8.9  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -1

Query: 823 REQFSSIXSKSSANVVFGWNHYYHYY*VWKNNMIVFNFYIISYVIVVRIAVFY*RF 656
           R +   I S  S N  +  N+Y + Y  +   +   N+ I    I V + V+Y  F
Sbjct: 308 RSKERKIISSLSNNYNYNNNNYKYNYNNYNKKLYYKNYIINIEQIPVPVPVYYGNF 363


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 840 ILHSSEGSNF--HQXAAKVLPMLYLVGITIITITRCGKT 730
           +L+S + ++F  H    KVL +     +++IT+  CG T
Sbjct: 104 MLNSEKHASFLKHSNIVKVLMIEQGASLSLITMELCGTT 142


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 11/52 (21%), Positives = 23/52 (44%)
 Frame = +2

Query: 461 QFQSSSSTVKGKSTNPNLKSKLKSNENGFVRNEDYPTKESSKGKKINQSTNS 616
           Q  S++ST+   + N N  +   +N N    N +    ++  G   + + N+
Sbjct: 220 QRNSNNSTITAGNANTNASNNNNNNNNN--NNNNNGANDNGNGNGASNNNNN 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,169
Number of Sequences: 438
Number of extensions: 5115
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)