Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_D19
(897 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 31 1.6
07_03_1189 + 24681067-24681588 30 2.9
03_05_0336 - 23265283-23265462,23266023-23266118,23266571-23267020 29 6.6
03_02_0973 - 12826036-12826131,12826379-12826462,12826542-128265... 29 6.6
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.6
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.8
06_03_0218 + 18219956-18220555 28 8.8
03_04_0061 - 16949038-16950006 28 8.8
03_02_0178 + 6195402-6199158,6199438-6200003 28 8.8
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +2
Query: 527 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 685
CWR + T D Q + +KD P + PSC L+F P P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335
>07_03_1189 + 24681067-24681588
Length = 173
Score = 29.9 bits (64), Expect = 2.9
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
Frame = -1
Query: 888 GXXQGXKWGLPGWXQDDSYRIRPTGRAERGFGHTAQLGANDLHRTEIPTAGXMRXRHASR 709
G + +WG GW R GR R FG +L L T + G
Sbjct: 11 GGGRQWRWGHAGWR-------RSLGRRLRAFGRATKL-PRKLEGTRVSREGEREGGTTEP 62
Query: 708 REKGG-QVSGKRQGRNRRAHEGASRGKR 628
+G Q + +++ RRA EG G R
Sbjct: 63 GRRGDEQPTARKRVLRRRAGEGVGEGAR 90
>03_05_0336 - 23265283-23265462,23266023-23266118,23266571-23267020
Length = 241
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 719 WRXLIXPAVGISVRCRSFAPSWA 787
W + P ++ RCR+ APSWA
Sbjct: 44 WPDPVLPRPDLAARCRATAPSWA 66
>03_02_0973 -
12826036-12826131,12826379-12826462,12826542-12826595,
12826742-12826830,12826889-12826985,12827066-12827074,
12827419-12827478,12828082-12828204,12828654-12828758,
12830203-12830535
Length = 349
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +1
Query: 652 VRSPVP-TLPLTGYLSAFLPSGSVAXSHXSRCRYLSSV*VVRSKLGCVPKPPFSPTGGPY 828
+R P P T P +G S+FL SS V R+ G P P F+P P+
Sbjct: 8 LRLPTPSTAPSSGASSSFLSLPPTLLRQARGGAAASSALVARAASGGSPNPLFNPRADPF 67
Query: 829 PVTI 840
T+
Sbjct: 68 LSTL 71
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.6
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +2
Query: 359 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 514
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 308 NESAN---ARGEAVCVLGALPLPRSLTRCAR 391
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>06_03_0218 + 18219956-18220555
Length = 199
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -1
Query: 714 SRREKGGQVSG--KRQGRNRRAHEGASRGKRLVS 619
+RRE+ + +G KR+GR R G RGKR S
Sbjct: 106 ARRERRLEAAGAEKREGRRRGGSSGGLRGKRRAS 139
>03_04_0061 - 16949038-16950006
Length = 322
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 609 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 725
RT+K PG+ ++PRA+ + P Y VR + +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293
>03_02_0178 + 6195402-6199158,6199438-6200003
Length = 1440
Score = 28.3 bits (60), Expect = 8.8
Identities = 24/77 (31%), Positives = 30/77 (38%)
Frame = -1
Query: 876 GXKWGLPGWXQDDSYRIRPTGRAERGFGHTAQLGANDLHRTEIPTAGXMRXRHASRREKG 697
G G G D YR P+ R G + + R E P G R SRR+ G
Sbjct: 49 GGGGGGGGGFYDHRYRESPSPRGYGGDRAMHRSESFSGFRREFPK-GFRSERDRSRRDGG 107
Query: 696 GQVSGKRQGRNRRAHEG 646
G + +RQ R EG
Sbjct: 108 GSSAWRRQSGGWRDSEG 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,203,155
Number of Sequences: 37544
Number of extensions: 545329
Number of successful extensions: 1645
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1645
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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