Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_D18
         (967 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...   305   7e-84
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    48   2e-06
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    28   1.7  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    26   6.9  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   9.1  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   9.1  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score =  305 bits (748), Expect = 7e-84
 Identities = 148/215 (68%), Positives = 177/215 (82%)
 Frame = +3

Query: 60  PPAVRLILXDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITD 239
           PP       DVFYLHSRLLERAAKMS K GGGSLTALPVIETQ GDVSAYIPTNVISITD
Sbjct: 316 PPGREAYPGDVFYLHSRLLERAAKMSPKHGGGSLTALPVIETQGGDVSAYIPTNVISITD 375

Query: 240 GQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFG 419
           GQIFLE+ELF+KGIRPAINVGLSVSRVGSAAQ KAMKQVAG +KL LAQYREVA+FAQFG
Sbjct: 376 GQIFLESELFFKGIRPAINVGLSVSRVGSAAQVKAMKQVAGQIKLFLAQYREVASFAQFG 435

Query: 420 SDLDAATQQLLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKITAFEKE 599
           SDLDA T+  L+RG+RLTELLKQ QY P+A+EEQV +IYCGV+G+LDK+   ++  FE +
Sbjct: 436 SDLDAGTRATLDRGLRLTELLKQPQYSPLAVEEQVPLIYCGVKGYLDKIPVDRVVEFEHK 495

Query: 600 FTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVK 704
           F  ++++S   ++  I K+G ++  ++ SLK ++K
Sbjct: 496 FIPYLRSSGAEIMEAIRKEGVLSKTTEDSLKAVIK 530



 Score = 33.1 bits (72), Expect = 0.060
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +2

Query: 47  LLRRPPGREAYPG 85
           LLRRPPGREAYPG
Sbjct: 312 LLRRPPGREAYPG 324


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 28/81 (34%), Positives = 46/81 (56%)
 Frame = +3

Query: 105 SRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIR 284
           S + ERA ++  +   GS+T +P++     D++  IP     IT+GQIF++ +L    I 
Sbjct: 310 STIYERAGRVEGR--NGSITQIPILTMPNDDITHPIPDLTGYITEGQIFVDRQLHNNAIY 367

Query: 285 PAINVGLSVSRVGSAAQTKAM 347
           P INV  S+SR+  +A  + M
Sbjct: 368 PPINVLPSLSRLMKSAIGEGM 388


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = +3

Query: 285 PAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRG- 461
           P  N+GL    V     T+  +   G +  E   Y  +  FA+  +D+D   +QL+  G 
Sbjct: 337 PHTNIGLMSKLV-----TQIEEPFGGELTFENPFYTTLQCFAENSADMDDNLRQLIKSGD 391

Query: 462 -MRLTELLKQGQYVPMAIEEQVAI 530
             ++T+L  + +      E  +A+
Sbjct: 392 TEKMTDLFSKSRLYRYFFETSIAV 415


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 391 VRSQLLPSSVLTWMPLHSSCSTEECVLLSSSSKDN 495
           +R    P   L W PLH +  +    LL+S SKDN
Sbjct: 216 LRRHTKPIMALCWQPLHLAPDSGP-YLLASGSKDN 249


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 641  GEKTLVASFDVLSEFLLEGSDFGGVQLVEVTADTAVNDGDLFLNS 507
            G+   + S+ +  +FLL   DF G +L+  T     +D +L +NS
Sbjct: 1379 GDLKHMTSYLIRQDFLLN-EDFVGTELIGTTDSYDYSDENLIINS 1422


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -3

Query: 545 DTAVNDGDLFLNSHGHILSLLEELSKTHSSVEQLLCSGIQVRTEL 411
           D  ++ G+   + +  I+SLL+ELS   S  E    S +Q+ +E+
Sbjct: 65  DAKLSMGEKMDDLNSSIVSLLQELSTLQSVAENTQSSIVQMTSEI 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,007
Number of Sequences: 5004
Number of extensions: 58396
Number of successful extensions: 188
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)