Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_D16
(913 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 28 2.1
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 27 2.8
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 27 3.7
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo... 27 4.9
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 27 4.9
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 27 4.9
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 26 6.5
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 26 8.5
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 26 8.5
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/80 (20%), Positives = 35/80 (43%)
Frame = +1
Query: 556 TLTRTPTPDYVDKAHVQLKTVKDEKAELESLESYKLKNPVNVAPKPPSNYFVKAPNGTTT 735
TL+ P P ++ A + L ++++ ESL + V+++ P +N K
Sbjct: 138 TLSAWPAPSRLEDAVISLVEADSQESDTESLPEINDSSDVSLSDLPSTNVTPKKTTTQID 197
Query: 736 MKKNARXVSVTICEYSNNGN 795
++ N +T+ ++ N
Sbjct: 198 VQTNIVTPPITVTAVPDSPN 217
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +1
Query: 499 DNILKTVLDLKTSNCRKNGTLTRTPTPDYVDKAHVQLKTVKDEKAELESLESYKLKNPVN 678
+NI+ + N + ++ + P V +AHVQ K KA L L Y N
Sbjct: 281 ENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYAKAYKAN 340
Query: 679 V 681
V
Sbjct: 341 V 341
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 27.1 bits (57), Expect = 3.7
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +1
Query: 499 DNILKTVLDLKTSNCRKNGTLTRTPTPDYVDKAHVQLKTVKDEKAELESLESYKLKNPVN 678
+NI+ + N + ++ + P V +AHVQ K KA L L Y N
Sbjct: 281 ENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAKAYKAN 340
Query: 679 V 681
V
Sbjct: 341 V 341
>SPAC23G3.05c |||regulator of G-protein signaling
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 343
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 441 RWWILCSFAFGYWRIIC 391
R W L FAFG++ +IC
Sbjct: 263 RVWTLLPFAFGFYNLIC 279
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 307 KPLVIIQCYEDRQPTLPLKKTDHLPFEATN 396
+PLV C EDRQ T K+ LP + ++
Sbjct: 160 QPLVDHDCIEDRQKTFASKQLPTLPLQKSS 189
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 26.6 bits (56), Expect = 4.9
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
Frame = +1
Query: 484 HLAKADNILKTVLDLKTSNCRKNGTLTRTPTPDYVDKAHVQLKTVKDEKAELESLESYKL 663
H+ + + +L+ + K N + N +P + VQ +E+ E +E K
Sbjct: 556 HIIEGEELLEEMK--KRENVKHNSQNFASPMQTDAEGDIVQ----NEEEKESVEVEEGKH 609
Query: 664 KNPV-NVAPKPPSNYFVKAPNGTTTMKKNARXVSVTICEYSNNGNSRREPT 813
KN + V+PKPP+ NG + ++ N V E N + ++P+
Sbjct: 610 KNDLPKVSPKPPTEGVDSEVNGESLVQVN----KVLKSEDDNTSEASKDPS 656
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 577 PDYVDKAHVQLKTVKDEKAELESLESYKLKNPVNVAPKPP 696
P Y+ +HV L+T ++ E+ KL + + PK P
Sbjct: 192 PKYIQYSHVDLETKEETLVEVSGRSLRKLLSSSSKNPKEP 231
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 303 IETFGHHPVLRRQTTYFAAQENR 371
+E FG+HP RQ + FA+ ++R
Sbjct: 270 VEAFGNHPPWWRQLSNFASVQDR 292
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 586 VDKAHVQLKTVKDEKAELESLESYKLKNPVNVAPKPPSNYFVK 714
++K + +K K+E ++ LE+YK K + P+N +K
Sbjct: 101 LEKTNDSIKETKNENFRMDVLETYKCKQLNHQTTHLPTNTVLK 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,652,119
Number of Sequences: 5004
Number of extensions: 76990
Number of successful extensions: 244
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -