Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_D16
         (913 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    38   0.010
Z81038-1|CAB02762.1|  219|Caenorhabditis elegans Hypothetical pr...    31   1.5  
AC006684-11|AAF39968.1|  550|Caenorhabditis elegans Hypothetical...    29   6.1  
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ...    28   8.1  

>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical protein
            H03E18.1 protein.
          Length = 1147

 Score = 37.9 bits (84), Expect = 0.010
 Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
 Frame = +1

Query: 298  NKSKPLVIIQCYEDRQPTLPLKKTDHLPFEATNDPPIPKREATEDXXXXXXXXITNGLQN 477
            N+S+P+V+ Q  +  +  +P+K+ D   F    D  +  +E TE         +T   +N
Sbjct: 688  NESEPVVVKQDVKITEEPVPMKRLDEKAFLDKIDQVVESQEETE-----KKKKVTT--KN 740

Query: 478  GNHLAKADNILKTV--LDLKTSNCRKNGTLTRTPTPDYVDKAHVQLKTVKDEKAELESLE 651
              H+   D +LK +  ++  ++   +  T   TP    V     +  T K ++ +++ ++
Sbjct: 741  SEHILDTDEVLKKIEKVEATSTTETEKPTTETTPATTTVTTTTEETTTPKKQEVKMKHMD 800

Query: 652  SYKLKNPVNVA 684
               L   +N A
Sbjct: 801  EKALMEKINEA 811


>Z81038-1|CAB02762.1|  219|Caenorhabditis elegans Hypothetical
           protein C25A1.1 protein.
          Length = 219

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 544 RKNGTLTRTPTPDYVDKA-HVQLKTVKDEKAELESLESYKLKNPV 675
           RK    T  P P+Y +K    QLK  KD K +LE  E+ KLKN V
Sbjct: 26  RKPTDATLVPEPEYCNKTLFEQLKNNKDAK-QLEIDEAKKLKNMV 69


>AC006684-11|AAF39968.1|  550|Caenorhabditis elegans Hypothetical
           protein T02H6.1a protein.
          Length = 550

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 23/65 (35%), Positives = 35/65 (53%)
 Frame = +2

Query: 515 QF*TLKPQIVEKTVL*LELRHQTTSTRHTYN*KRSKTKKLN*NHSNLINLRIPLMSHQSR 694
           QF  L   +VE++   + L+ +  S R ++  KR K KKL     + + LR+P  +HQS 
Sbjct: 473 QFQGLLLVVVEESNRVMNLKKKKKSWRKSW--KRRK-KKLRNKIPHCLRLRLPTYTHQSL 529

Query: 695 HQIIS 709
            QI S
Sbjct: 530 LQITS 534


>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
           protein Y47D3B.7 protein.
          Length = 1113

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 655 YKLKNPVNVAPKPPSNYFVKAPNGTTTMKKN 747
           Y  ++PV  +P PP N   ++   TTT  KN
Sbjct: 439 YSARSPVESSPSPPRNERKRSRMSTTTPMKN 469


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,965,158
Number of Sequences: 27780
Number of extensions: 420349
Number of successful extensions: 1142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)