Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_D16
         (913 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    24   2.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   8.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   8.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   8.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   8.9  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 368 PITFRSRQQMILQYPNAKLQRIHHLHHRCQ*QTVYKTETI 487
           P  F S  Q    + NAK+  I  L+H+    T+Y+ +T+
Sbjct: 65  PEFFDSLWQPDPYFLNAKVSEIAALNHKFSSVTLYRNKTV 104


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 14/63 (22%), Positives = 30/63 (47%)
 Frame = +1

Query: 475 NGNHLAKADNILKTVLDLKTSNCRKNGTLTRTPTPDYVDKAHVQLKTVKDEKAELESLES 654
           NG++ + +D + K   + + +  RKN         DY+D   V ++  +++      +E 
Sbjct: 148 NGSNSSNSDVLFKQNKEEEQTINRKNS--------DYLDNQEVSMENTENKSCTDSDIEK 199

Query: 655 YKL 663
           YK+
Sbjct: 200 YKM 202


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 216 VFSRLTFMIISNVFLAVFISHVK 284
           V +R+TF +   +FL  F  H K
Sbjct: 464 VIARITFPVAYFMFLTFFFIHYK 486


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 216 VFSRLTFMIISNVFLAVFISHVK 284
           V +R+TF +   +FL  F  H K
Sbjct: 450 VIARITFPVAYFMFLTFFFIHYK 472


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 216 VFSRLTFMIISNVFLAVFISHVK 284
           V +R+TF +   +FL  F  H K
Sbjct: 484 VIARITFPVAYFMFLTFFFIHYK 506


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 216 VFSRLTFMIISNVFLAVFISHVK 284
           V +R+TF +   +FL  F  H K
Sbjct: 433 VIARITFPVAYFMFLTFFFIHYK 455


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,278
Number of Sequences: 438
Number of extensions: 5746
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)