Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_D09
(883 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 34 0.031
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.054
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.054
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.5
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.7
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.9 bits (74), Expect = 0.031
Identities = 21/61 (34%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = +2
Query: 587 GGXXXXPPXXGPPRGGXRGXGXGXPPXGGXGPPPPXXXGGPPPXXXXXPA-PPXXXPPRX 763
GG P PP R P PPPP PPP PA PP PP
Sbjct: 1679 GGMAPAHPVSTPP---VRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPL 1735
Query: 764 P 766
P
Sbjct: 1736 P 1736
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.1 bits (72), Expect = 0.054
Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Frame = +2
Query: 605 PPXXGPPRGGXRGXGXGXPPXGGXGPPPPXXXGGPPPXXXXXP---APPXXXPPRXPP 769
PP PPR G PP G PPPP P P + PP PP
Sbjct: 337 PPPPPPPRSNAAG-SIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +2
Query: 659 PPXGGXGPPPPXXXGGPPPXXXXXPAPPXXXPP 757
PP PP P PP PAPP P
Sbjct: 450 PPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Frame = -2
Query: 705 PPXXXGGGG-PXPPXGGXPXPXPRXPPRGGPXXG 607
PP G P PP G P P PPR P G
Sbjct: 342 PPRSNAAGSIPLPPQGRSAPPPP--PPRSAPSTG 373
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/57 (29%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
Frame = +2
Query: 605 PPXXGPPRGGXRGXGX-GXPPXGGXGPPPPXXXGGPPPXXXXXPAPPXXXPPRXPPR 772
PP PP RG G PPPP P PP PPR
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.1 bits (72), Expect = 0.054
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = +1
Query: 658 APXRXXGPPPPXXXGGPPPXXVXKXRPPXXXTPQXPPPXXLXXGGA 795
AP PPP GGPPP P PPP + GG+
Sbjct: 745 APAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGS 790
Score = 29.1 bits (62), Expect = 0.88
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 680 PPPPXXXGGPPPXXXXXPAPPXXXPPRXPP 769
PPP GGPPP PP PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 680 PPPPXXXGGPPPXXXXXPAPPXXXPPRXPP 769
PP P G PPP A PP PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = -1
Query: 655 PXPXPPXXXPXXPLXGGXXXXPPP 584
P P P P P+ GG PPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/45 (33%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Frame = -2
Query: 705 PPXXXGGGGPXPPXGGXPX--PXPRXPPRGGPXXGGXXXXPPXPR 577
P GG P PP G P P PP GG P P+
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQ 798
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +2
Query: 659 PPXGGXGPPPPXXXGGPPPXXXXXPAPPXXXPPRXPP 769
P PP P G PP APP P PP
Sbjct: 1124 PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 680 PPPPXXXGGPPPXXXXXPAPPXXXPPRXPP 769
PP P G PP APP P PP
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPP 1141
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = +2
Query: 659 PPXGGXGPPPPXXXGGPPPXXXXXPAPPXXXPPRXPP 769
P PP P PP APP P PP
Sbjct: 1015 PKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPP 1051
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/72 (26%), Positives = 20/72 (27%)
Frame = +1
Query: 556 PPPPXGXXXXGGXXXXPPXXGAXXGXXXGXGGGXAPXRXXGPPPPXXXGGPPPXXVXKXR 735
PP P G PP A G P PP P G PP V +
Sbjct: 1179 PPVPK---PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAK 1235
Query: 736 PPXXXTPQXPPP 771
P P P
Sbjct: 1236 APPVPAPSSEAP 1247
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/54 (29%), Positives = 16/54 (29%)
Frame = +2
Query: 608 PXXGPPRGGXRGXGXGXPPXGGXGPPPPXXXGGPPPXXXXXPAPPXXXPPRXPP 769
P G P G P PP P G PP APP P P
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +2
Query: 659 PPXGGXGPPPPXXXGGPPPXXXXXPAPP 742
PP G PPPP G PP P PP
Sbjct: 5 PP--GNPPPPPPPPGFEPPSQPPPPPPP 30
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/51 (31%), Positives = 16/51 (31%)
Frame = +1
Query: 553 PPPPPXGXXXXGGXXXXPPXXGAXXGXXXGXGGGXAPXRXXGPPPPXXXGG 705
PPP P G GG G G G GG G P GG
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = -2
Query: 768 GGXLGGXXXGGAGFXXXXGGGPPXXXGGGGPXPPXGGXP 652
GG GG G GF GG G GG GG P
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGP 265
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -2
Query: 753 GXXXGGAGFXXXXGGGPPXXXGGGGPXPPXGG 658
G GG G GGPP GG G GG
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGG 215
Score = 25.8 bits (54), Expect = 8.2
Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = -2
Query: 765 GXLGGXXXGGAGFXXXXGGGPPXXXGGGGPXPPXGGXPXPXPRXP-PRGGP 616
G GG G GF GG G GG GG P P GGP
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 4.7
Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 10/65 (15%)
Frame = +2
Query: 605 PPXXGPPRGGXRGXGXGX-PPXGGXGPP------PPXXXGGP---PPXXXXXPAPPXXXP 754
PP PPR PP PP PP P PP P+ P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
Query: 755 PRXPP 769
P+ PP
Sbjct: 199 PKVPP 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.148 0.501
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,393,479
Number of Sequences: 5004
Number of extensions: 19899
Number of successful extensions: 176
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
- SilkBase 1999-2023 -