Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_D09
         (883 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.17 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +2

Query: 623 PRGGXRGXGXGXPPXGGXGPPPPXXXGGPP 712
           P    +    G PP    GPPP    G PP
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 26.6 bits (56), Expect = 0.30
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +2

Query: 659 PPXGGXGPPPPXXXGGPPPXXXXXPAPPXXXPPRXPP 769
           P  G  GP P        P     P P    PP  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 25.0 bits (52), Expect = 0.92
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 620 PPRGGXRGXGXGXPPXGGXGPPP 688
           P RG       G PP G  G PP
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -2

Query: 678 PXPPXGGXPXPXPRXPPRGGP 616
           P  P  G P    + PP GGP
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGP 51



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/39 (28%), Positives = 11/39 (28%)
 Frame = +2

Query: 653 GXPPXGGXGPPPPXXXGGPPPXXXXXPAPPXXXPPRXPP 769
           G  P     P  P     P P     P  P   PP   P
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 738 PPXXNPPXAPPGE 776
           PP   PP APP +
Sbjct: 46  PPPGGPPGAPPSQ 58



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = -2

Query: 705 PPXXXGGGGPXPPXGGXPXPXPRXPPRGGP 616
           P     G  P P  G  P   P  PP   P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = +1

Query: 646 GGGXAPXRXXGPPPPXXXGGPPPXXVXK 729
           G    P +   PPPP    GP    + K
Sbjct: 333 GDSDTPPKPAPPPPPPSSSGPDSAKLDK 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.148    0.501 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,753
Number of Sequences: 438
Number of extensions: 5418
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)