Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_D07
(891 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.38
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.1
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 2.7
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 4.7
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 26 6.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 6.3
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|... 26 6.3
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 30.3 bits (65), Expect = 0.38
Identities = 28/82 (34%), Positives = 29/82 (35%)
Frame = -2
Query: 764 GGXXKXKGGPXXGGXXXGGEKXXGXFFXKXPXGGGXPXPXXXXGGGXXFXEXPPXGGGGX 585
GG GGP G GG G F + GG GGG E P G GG
Sbjct: 191 GGFGGGSGGPPPGPGGFGG---FGGFGGEGHHHGGH----GGFGGGPGGFEGGPGGFGGG 243
Query: 584 PXGKXXXXKGAXFXGFXGPFWG 519
P G G F G G F G
Sbjct: 244 PGGFGGGLGG--FGGGPGGFGG 263
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 2.1
Identities = 21/81 (25%), Positives = 24/81 (29%), Gaps = 2/81 (2%)
Frame = +1
Query: 508 PXXAPQKGPXNPXKXAPFXXXFFPXGXP--PPPXGGXSKKXXPPPXFXXGXGXPPPXGXF 681
P P P P + G P PPP S + P P P G
Sbjct: 1033 PIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIP 1092
Query: 682 XKXXPXXFSPPXXKPPXXGPP 744
P +PP KP PP
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPP 1113
Score = 27.1 bits (57), Expect = 3.6
Identities = 25/89 (28%), Positives = 26/89 (29%), Gaps = 2/89 (2%)
Frame = +1
Query: 508 PXXAPQKGPXNPXKXAPFXXXFFPXGXPPPPXGGXSKKXXPPPXFXXGXGXPPPXGXFXK 687
P AP P P P G PP P + P P G P
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAP---SGAPPVPKPSVAAP 1169
Query: 688 XXPXXFS--PPXXKPPXXGPPXFXXXPPP 768
P S PP KP PP PPP
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPP----VPPP 1194
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Frame = +1
Query: 589 PPPPXGGXSKKXXPPPXF--XXGXGXPPPXGXFXKXXPXXFSPPXXKPPXXGPPXFXXXP 762
PPPP + PPP G PPP P PP PP P P
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPP---MHHEPGEHMPP---PPMHHEPGEHMPP 261
Query: 763 PP 768
PP
Sbjct: 262 PP 263
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Frame = +1
Query: 589 PPPPXGGXSKKXXPPPXF--XXGXGXPPPXGXFXKXXPXXFSPPXXKPPXXGPPXFXXXP 762
PPPP + PPP G PPP P PP PP P P
Sbjct: 234 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP---MHHEPGEHMPP---PPMHHEPGEHMPP 287
Query: 763 PP 768
PP
Sbjct: 288 PP 289
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Frame = +1
Query: 589 PPPPXGGXSKKXXPPPXF--XXGXGXPPPXGXFXKXXPXXFSPPXXKPPXXGPPXFXXXP 762
PPPP + PPP G PPP P PP PP P P
Sbjct: 260 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP---MHHEPGEHMPP---PPMHHEPGEHMPP 313
Query: 763 PP 768
PP
Sbjct: 314 PP 315
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Frame = +1
Query: 589 PPPPXGGXSKKXXPPPXF--XXGXGXPPPXGXFXKXXPXXFSPPXXKPPXXGPPXFXXXP 762
PPPP + PPP G PPP P PP PP P P
Sbjct: 286 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP---MHHEPGEHMPP---PPMHHEPGEHMPP 339
Query: 763 PP 768
PP
Sbjct: 340 PP 341
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 577 PXGXPPPPXGGXSKKXXPPPXFXXGXGXPPP 669
P PPP PPP G G PPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 231 YKLVTNKAIASQISQIKHFFHCILVVVCPNSSMY 130
Y L+TN AI + F+H + + C N++ Y
Sbjct: 332 YSLLTNNAIVFALVLGSAFYHSWITLGCGNANFY 365
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 694 PXXFSPPXXKPPXXGPPXFXXXPPPXXKXKK 786
P PP PP PP PPP KK
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKK 35
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +3
Query: 576 PXGXPPPPXGXXFXKXXXPPXXXXGXGXPPPXGGFXKK 689
P PPPP F PP PPP G+ KK
Sbjct: 6 PGNPPPPPPPPGFEPPSQPP--------PPPPPGYVKK 35
>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 104
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 141 SLDKPQLECSEKNALFVKFVMLLL-YL*PIYK 233
S DKP CS KN F+K +++L YL +YK
Sbjct: 17 SSDKPN-NCSRKNMFFLKNIIVLSNYLYLLYK 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,336
Number of Sequences: 5004
Number of extensions: 48605
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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