Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_D04
(934 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 36 0.041
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 36 0.041
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.22
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.22
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.22
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.51
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.51
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.51
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 30 2.7
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 29 3.6
AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical... 29 3.6
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z67738-4|CAJ43444.1| 279|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z67738-3|CAA91544.2| 332|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z66498-1|CAA91290.1| 304|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 6.3
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 29 6.3
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 29 6.3
AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like ... 29 6.3
AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like ... 29 6.3
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 28 8.3
U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astaci... 28 8.3
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 35.9 bits (79), Expect = 0.041
Identities = 27/88 (30%), Positives = 29/88 (32%), Gaps = 2/88 (2%)
Frame = +1
Query: 400 GLXXPPXPRXXXXXFXGPXPXPPPXTPGPRXXGXGXGFXPPQGGXSXXPQXRGXPXXKXF 579
G+ P P + P P PP TPGP G PP P G P
Sbjct: 282 GMTPRPPPPPSSGMWPPPPPPPPGRTPGP--PGMPGMPPPPPPSRFGPPGMGGMPPPPPP 339
Query: 580 DQRXPKG--PPTLKRXXXXGFSXXXPPP 657
R P G PP R G PPP
Sbjct: 340 GMRYPGGMPPPPPPRYPSAGPGMYPPPP 367
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/54 (29%), Positives = 17/54 (31%)
Frame = +3
Query: 546 PXXGXTPXKXF*PKXPKRXPXPKKXXXXGFFXXAPPPXXAXKNSPPISXGATPP 707
P TP P P P P G + PPP PP G PP
Sbjct: 266 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 319
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 35.9 bits (79), Expect = 0.041
Identities = 27/88 (30%), Positives = 29/88 (32%), Gaps = 2/88 (2%)
Frame = +1
Query: 400 GLXXPPXPRXXXXXFXGPXPXPPPXTPGPRXXGXGXGFXPPQGGXSXXPQXRGXPXXKXF 579
G+ P P + P P PP TPGP G PP P G P
Sbjct: 292 GMTPRPPPPPSSGMWPPPPPPPPGRTPGP--PGMPGMPPPPPPSRFGPPGMGGMPPPPPP 349
Query: 580 DQRXPKG--PPTLKRXXXXGFSXXXPPP 657
R P G PP R G PPP
Sbjct: 350 GMRYPGGMPPPPPPRYPSAGPGMYPPPP 377
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/54 (29%), Positives = 17/54 (31%)
Frame = +3
Query: 546 PXXGXTPXKXF*PKXPKRXPXPKKXXXXGFFXXAPPPXXAXKNSPPISXGATPP 707
P TP P P P P G + PPP PP G PP
Sbjct: 276 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 329
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.5 bits (73), Expect = 0.22
Identities = 25/80 (31%), Positives = 25/80 (31%)
Frame = +1
Query: 367 PXPGGXXXXFXGLXXPPXPRXXXXXFXGPXPXPPPXTPGPRXXGXGXGFXPPQGGXSXXP 546
P P G G PP P GP P PPP P G PP GG P
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP-PPPPGGCPPPP 772
Query: 547 QXRGXPXXKXFDQRXPKGPP 606
P F P PP
Sbjct: 773 P---PPPPGGFKGGPPPPPP 789
Score = 31.5 bits (68), Expect = 0.89
Identities = 26/82 (31%), Positives = 26/82 (31%)
Frame = +1
Query: 412 PPXPRXXXXXFXGPXPXPPPXTPGPRXXGXGXGFXPPQGGXSXXPQXRGXPXXKXFDQRX 591
PP P GP P PPP P G PP GG P G P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPP--PPPPGG--LPPISGGPPPPPPPPGGC 768
Query: 592 PKGPPTLKRXXXXGFSXXXPPP 657
P PP GF PPP
Sbjct: 769 PPPPPP---PPPGGFKGGPPPP 787
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/74 (28%), Positives = 21/74 (28%)
Frame = +3
Query: 528 GXXXFXPXXGXTPXKXF*PKXPKRXPXPKKXXXXGFFXXAPPPXXAXKNSPPISXGATPP 707
G P G P P P P PPP PPIS G PP
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 761
Query: 708 GXLXXPGXXPREXP 749
PG P P
Sbjct: 762 P--PPPGGCPPPPP 773
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.5 bits (73), Expect = 0.22
Identities = 25/80 (31%), Positives = 25/80 (31%)
Frame = +1
Query: 367 PXPGGXXXXFXGLXXPPXPRXXXXXFXGPXPXPPPXTPGPRXXGXGXGFXPPQGGXSXXP 546
P P G G PP P GP P PPP P G PP GG P
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP-PPPPGGCPPPP 772
Query: 547 QXRGXPXXKXFDQRXPKGPP 606
P F P PP
Sbjct: 773 P---PPPPGGFKGGPPPPPP 789
Score = 31.5 bits (68), Expect = 0.89
Identities = 26/82 (31%), Positives = 26/82 (31%)
Frame = +1
Query: 412 PPXPRXXXXXFXGPXPXPPPXTPGPRXXGXGXGFXPPQGGXSXXPQXRGXPXXKXFDQRX 591
PP P GP P PPP P G PP GG P G P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPP--PPPPGG--LPPISGGPPPPPPPPGGC 768
Query: 592 PKGPPTLKRXXXXGFSXXXPPP 657
P PP GF PPP
Sbjct: 769 PPPPPP---PPPGGFKGGPPPP 787
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/74 (28%), Positives = 21/74 (28%)
Frame = +3
Query: 528 GXXXFXPXXGXTPXKXF*PKXPKRXPXPKKXXXXGFFXXAPPPXXAXKNSPPISXGATPP 707
G P G P P P P PPP PPIS G PP
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 761
Query: 708 GXLXXPGXXPREXP 749
PG P P
Sbjct: 762 P--PPPGGCPPPPP 773
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.5 bits (73), Expect = 0.22
Identities = 25/80 (31%), Positives = 25/80 (31%)
Frame = +1
Query: 367 PXPGGXXXXFXGLXXPPXPRXXXXXFXGPXPXPPPXTPGPRXXGXGXGFXPPQGGXSXXP 546
P P G G PP P GP P PPP P G PP GG P
Sbjct: 297 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP-PPPPGGCPPPP 355
Query: 547 QXRGXPXXKXFDQRXPKGPP 606
P F P PP
Sbjct: 356 P---PPPPGGFKGGPPPPPP 372
Score = 31.5 bits (68), Expect = 0.89
Identities = 26/82 (31%), Positives = 26/82 (31%)
Frame = +1
Query: 412 PPXPRXXXXXFXGPXPXPPPXTPGPRXXGXGXGFXPPQGGXSXXPQXRGXPXXKXFDQRX 591
PP P GP P PPP P G PP GG P G P
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPP--PPPPGG--LPPISGGPPPPPPPPGGC 351
Query: 592 PKGPPTLKRXXXXGFSXXXPPP 657
P PP GF PPP
Sbjct: 352 PPPPPP---PPPGGFKGGPPPP 370
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/74 (28%), Positives = 21/74 (28%)
Frame = +3
Query: 528 GXXXFXPXXGXTPXKXF*PKXPKRXPXPKKXXXXGFFXXAPPPXXAXKNSPPISXGATPP 707
G P G P P P P PPP PPIS G PP
Sbjct: 285 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 344
Query: 708 GXLXXPGXXPREXP 749
PG P P
Sbjct: 345 P--PPPGGCPPPPP 356
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.3 bits (70), Expect = 0.51
Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Frame = +1
Query: 451 PXPXPPPXTPGPRXXGXGXGFXPPQGGXSXXPQXRGXPXXKXFDQR--XPKGPPT 609
P PP P PR PPQ G S P G P +R + PPT
Sbjct: 292 PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPT 346
Score = 31.1 bits (67), Expect = 1.2
Identities = 30/119 (25%), Positives = 35/119 (29%), Gaps = 3/119 (2%)
Frame = +3
Query: 396 FXXKXXAXPPGXXXXXXGPXPVXPXXXXXXPXXRXGXXVSPPPRGXXXFXPXXGXTPXKX 575
F K A P G P P P PPPR P G P
Sbjct: 225 FRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPP-- 282
Query: 576 F*PKXPKRXPXPKKXXXXGFFXXAPPPXXAXKNS---PPISXGATPPGXLXXPGXXPRE 743
P P P+ G PPP + PP + G+ PP P PR+
Sbjct: 283 --PPAGGSPPPPR----AGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQ 335
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/65 (27%), Positives = 19/65 (29%)
Frame = +1
Query: 412 PPXPRXXXXXFXGPXPXPPPXTPGPRXXGXGXGFXPPQGGXSXXPQXRGXPXXKXFDQRX 591
PP P+ P PPP P G PP G P G P
Sbjct: 240 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSP-PPPPTGSPPPPPAGGSPPPPRAGSPP 298
Query: 592 PKGPP 606
P PP
Sbjct: 299 PPPPP 303
Score = 28.3 bits (60), Expect = 8.3
Identities = 21/70 (30%), Positives = 21/70 (30%)
Frame = +1
Query: 448 GPXPXPPPXTPGPRXXGXGXGFXPPQGGXSXXPQXRGXPXXKXFDQRXPKGPPTLKRXXX 627
G P PPP P G G PP G S P G P P PP
Sbjct: 235 GSPPPPPPPKGSPPLAGSGSPPPPPAAG-SPPPPRTGSPPPPPTGS--PPPPPAGGSPPP 291
Query: 628 XGFSXXXPPP 657
PPP
Sbjct: 292 PRAGSPPPPP 301
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.3 bits (70), Expect = 0.51
Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Frame = +1
Query: 451 PXPXPPPXTPGPRXXGXGXGFXPPQGGXSXXPQXRGXPXXKXFDQR--XPKGPPT 609
P PP P PR PPQ G S P G P +R + PPT
Sbjct: 313 PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPT 367
Score = 31.1 bits (67), Expect = 1.2
Identities = 30/119 (25%), Positives = 35/119 (29%), Gaps = 3/119 (2%)
Frame = +3
Query: 396 FXXKXXAXPPGXXXXXXGPXPVXPXXXXXXPXXRXGXXVSPPPRGXXXFXPXXGXTPXKX 575
F K A P G P P P PPPR P G P
Sbjct: 246 FRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPP-- 303
Query: 576 F*PKXPKRXPXPKKXXXXGFFXXAPPPXXAXKNS---PPISXGATPPGXLXXPGXXPRE 743
P P P+ G PPP + PP + G+ PP P PR+
Sbjct: 304 --PPAGGSPPPPR----AGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQ 356
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/65 (27%), Positives = 19/65 (29%)
Frame = +1
Query: 412 PPXPRXXXXXFXGPXPXPPPXTPGPRXXGXGXGFXPPQGGXSXXPQXRGXPXXKXFDQRX 591
PP P+ P PPP P G PP G P G P
Sbjct: 261 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSP-PPPPTGSPPPPPAGGSPPPPRAGSPP 319
Query: 592 PKGPP 606
P PP
Sbjct: 320 PPPPP 324
Score = 28.3 bits (60), Expect = 8.3
Identities = 21/70 (30%), Positives = 21/70 (30%)
Frame = +1
Query: 448 GPXPXPPPXTPGPRXXGXGXGFXPPQGGXSXXPQXRGXPXXKXFDQRXPKGPPTLKRXXX 627
G P PPP P G G PP G S P G P P PP
Sbjct: 256 GSPPPPPPPKGSPPLAGSGSPPPPPAAG-SPPPPRTGSPPPPPTGS--PPPPPAGGSPPP 312
Query: 628 XGFSXXXPPP 657
PPP
Sbjct: 313 PRAGSPPPPP 322
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.3 bits (70), Expect = 0.51
Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Frame = +1
Query: 451 PXPXPPPXTPGPRXXGXGXGFXPPQGGXSXXPQXRGXPXXKXFDQR--XPKGPPT 609
P PP P PR PPQ G S P G P +R + PPT
Sbjct: 298 PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPT 352
Score = 31.1 bits (67), Expect = 1.2
Identities = 30/119 (25%), Positives = 35/119 (29%), Gaps = 3/119 (2%)
Frame = +3
Query: 396 FXXKXXAXPPGXXXXXXGPXPVXPXXXXXXPXXRXGXXVSPPPRGXXXFXPXXGXTPXKX 575
F K A P G P P P PPPR P G P
Sbjct: 231 FRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPP-- 288
Query: 576 F*PKXPKRXPXPKKXXXXGFFXXAPPPXXAXKNS---PPISXGATPPGXLXXPGXXPRE 743
P P P+ G PPP + PP + G+ PP P PR+
Sbjct: 289 --PPAGGSPPPPR----AGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQ 341
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/65 (27%), Positives = 19/65 (29%)
Frame = +1
Query: 412 PPXPRXXXXXFXGPXPXPPPXTPGPRXXGXGXGFXPPQGGXSXXPQXRGXPXXKXFDQRX 591
PP P+ P PPP P G PP G P G P
Sbjct: 246 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSP-PPPPTGSPPPPPAGGSPPPPRAGSPP 304
Query: 592 PKGPP 606
P PP
Sbjct: 305 PPPPP 309
Score = 28.3 bits (60), Expect = 8.3
Identities = 21/70 (30%), Positives = 21/70 (30%)
Frame = +1
Query: 448 GPXPXPPPXTPGPRXXGXGXGFXPPQGGXSXXPQXRGXPXXKXFDQRXPKGPPTLKRXXX 627
G P PPP P G G PP G S P G P P PP
Sbjct: 241 GSPPPPPPPKGSPPLAGSGSPPPPPAAG-SPPPPRTGSPPPPPTGS--PPPPPAGGSPPP 297
Query: 628 XGFSXXXPPP 657
PPP
Sbjct: 298 PRAGSPPPPP 307
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 29.9 bits (64), Expect = 2.7
Identities = 28/92 (30%), Positives = 29/92 (31%)
Frame = -3
Query: 923 NRSG*XGGFXKQXKXGGGX*XGGGNHXXGVREKAPXSXRXKGGXVFRXRPGXKRGGXXGX 744
N G GG GGG GGG G GG G GG G
Sbjct: 77 NWGGNGGGRGDWGGNGGGGRGGGGRGDWGGNNNGGGGNWGGGGNNDGGWGGNNGGGGGGR 136
Query: 743 FPGXXXGXX*XPGGGCPX*NGGXIFXSXXGGG 648
G G G G P NGG + GGG
Sbjct: 137 GGGGRGGD----GRGPPGSNGGGDWGGNGGGG 164
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/62 (30%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Frame = +3
Query: 546 PXXGXTPXKXF*PKXPKRXPXPKKXXXXGFFXXAPPPXXAXKNSPPISXG-ATPPGXLXX 722
P P + P P R P G PPP + PP G A PPG
Sbjct: 113 PGPPGPPGRDGRPGAPGRPGNPGPPGRDGALLPGPPPKPPCQKCPPGPPGPAGPPGPKGL 172
Query: 723 PG 728
PG
Sbjct: 173 PG 174
>AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical
protein K07H8.10 protein.
Length = 798
Score = 29.5 bits (63), Expect = 3.6
Identities = 25/79 (31%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Frame = -3
Query: 878 GGGX*XGGGNHXXGVREKAPXSXRX--KGGXVFRXRPGXKRGGXXGXFPGXXXGXX*XPG 705
GG G R ++P R +GG R R G RGG G F G G G
Sbjct: 47 GGDRGRSSSGFRGGDRGRSPGGFRGDREGGFSPRGRGGGFRGGDRGGFRGGDRGGSPWRG 106
Query: 704 GGCPX*NGGXIFXSXXGGG 648
G GG S GG
Sbjct: 107 GDRGNFRGGDRGGSPWRGG 125
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +1
Query: 448 GPXPXPPPXTPGPRXXGXGXGFXPPQGGXSXXPQXRGXP 564
GP P PP PG G G P +GG P RG P
Sbjct: 149 GPGPKGPPGPPG----GPGELGGPGRGGNRGPPGPRGPP 183
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +1
Query: 448 GPXPXPPPXTPGPRXXGXGXGFXPPQGGXSXXPQXRGXP 564
GP P PP PG G G P +GG P RG P
Sbjct: 149 GPGPKGPPGPPG----GPGELGGPGRGGNRGPPGPRGPP 183
>Z67738-4|CAJ43444.1| 279|Caenorhabditis elegans Hypothetical
protein W03G11.1b protein.
Length = 279
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/50 (36%), Positives = 20/50 (40%)
Frame = +1
Query: 457 PXPPPXTPGPRXXGXGXGFXPPQGGXSXXPQXRGXPXXKXFDQRXPKGPP 606
P PP PGP G G P + G + P RG P R P G P
Sbjct: 139 PAGPPGRPGPDGENGGAG-EPGRDGLAGRPGARGSP-----GPRGPSGNP 182
>Z67738-3|CAA91544.2| 332|Caenorhabditis elegans Hypothetical
protein W03G11.1a protein.
Length = 332
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/50 (36%), Positives = 20/50 (40%)
Frame = +1
Query: 457 PXPPPXTPGPRXXGXGXGFXPPQGGXSXXPQXRGXPXXKXFDQRXPKGPP 606
P PP PGP G G P + G + P RG P R P G P
Sbjct: 192 PAGPPGRPGPDGENGGAG-EPGRDGLAGRPGARGSP-----GPRGPSGNP 235
>Z66498-1|CAA91290.1| 304|Caenorhabditis elegans Hypothetical
protein M195.1 protein.
Length = 304
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/53 (30%), Positives = 16/53 (30%)
Frame = +1
Query: 448 GPXPXPPPXTPGPRXXGXGXGFXPPQGGXSXXPQXRGXPXXKXFDQRXPKGPP 606
G P PP TPG G P G P F P GPP
Sbjct: 113 GSGPAGPPGTPGEDGRDGNDGQPGPDGQPGSDAPAEAIPTADDFCFDCPAGPP 165
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.7 bits (61), Expect = 6.3
Identities = 25/83 (30%), Positives = 25/83 (30%)
Frame = -3
Query: 878 GGGX*XGGGNHXXGVREKAPXSXRXKGGXVFRXRPGXKRGGXXGXFPGXXXGXX*XPGGG 699
GGG GGG G GG G GG G G G GGG
Sbjct: 106 GGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGG---GGG 162
Query: 698 CPX*NGGXIFXSXXGGGXXXEKP 630
C GG GGG P
Sbjct: 163 CGGGGGGGCGGGSSGGGGYAVAP 185
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.7 bits (61), Expect = 6.3
Identities = 25/83 (30%), Positives = 25/83 (30%)
Frame = -3
Query: 878 GGGX*XGGGNHXXGVREKAPXSXRXKGGXVFRXRPGXKRGGXXGXFPGXXXGXX*XPGGG 699
GGG GGG G GG G GG G G G GGG
Sbjct: 106 GGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGG---GGG 162
Query: 698 CPX*NGGXIFXSXXGGGXXXEKP 630
C GG GGG P
Sbjct: 163 CGGGGGGGCGGGSSGGGGYAVAP 185
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +1
Query: 451 PXPXPPPXTPGPRXXGXGXGFXPPQGGXSXXPQXRG 558
P P PP PGP+ G P Q G P RG
Sbjct: 139 PGPAGPPGAPGPKGNNGQPG-APAQSGGRGPPGPRG 173
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +1
Query: 451 PXPXPPPXTPGPRXXGXGXGFXPPQGGXSXXPQXRG 558
P P PP PGP+ G P Q G P RG
Sbjct: 139 PGPAGPPGAPGPKGNNGQPG-APAQSGGRGPPGPRG 173
>AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform b protein.
Length = 453
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 463 PPPXTPGPRXXGXGXGFXPPQGG 531
PPP P P G G G+ P GG
Sbjct: 63 PPPPPPPPAPIGGGAGYAAPFGG 85
>AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform a protein.
Length = 393
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 463 PPPXTPGPRXXGXGXGFXPPQGG 531
PPP P P G G G+ P GG
Sbjct: 63 PPPPPPPPAPIGGGAGYAAPFGG 85
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/58 (27%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Frame = +3
Query: 582 PKXPKRXPXPKKXXXXGF--FXXAPPPXXAXKNSPPISXGATPPGXLXXPGXXPREXP 749
P P P P+ G PPP PP+ G PP + PR P
Sbjct: 109 PPMPTPMPFPQHFPFPGMPPMPSGPPPPSMAYGMPPMPSGMMPPRGMPGAYPPPRGYP 166
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/58 (27%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Frame = +3
Query: 582 PKXPKRXPXPKKXXXXGF--FXXAPPPXXAXKNSPPISXGATPPGXLXXPGXXPREXP 749
P P P P+ G PPP PP+ G PP + PR P
Sbjct: 109 PPMPTPMPFPQHFPFPGMPPMPSGPPPPSMAYGMPPMPSGMMPPRGMPGAYPPPRGYP 166
>U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astacin
protease protein33 protein.
Length = 644
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Frame = +2
Query: 791 PXRLXPXGKXGPFP*---PPXXGFXPRXRXPPPPWXVFXXPRFXPTGWP 928
P L P G P+ PP G P PPPPW R P G P
Sbjct: 32 PGPLRPWGPPPPWHRNRGPPPFGPPPPWDRPPPPWRRPPWHRRPPWGLP 80
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,817,428
Number of Sequences: 27780
Number of extensions: 273697
Number of successful extensions: 1137
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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