Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_D01
(895 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 109 2e-24
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 109 2e-24
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 109 2e-24
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 78 7e-15
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 78 7e-15
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 63 3e-10
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 63 3e-10
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 63 3e-10
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 62 5e-10
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 60 3e-09
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 59 4e-09
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 59 4e-09
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 59 4e-09
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 53 3e-07
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 51 1e-06
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 51 1e-06
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 51 1e-06
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 51 1e-06
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 51 1e-06
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 48 7e-06
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 48 1e-05
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 47 2e-05
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 46 3e-05
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 46 3e-05
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 43 3e-04
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 42 5e-04
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 42 8e-04
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 42 8e-04
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 40 0.002
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 39 0.006
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 39 0.006
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 38 0.010
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 38 0.010
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 38 0.010
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 38 0.010
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 38 0.010
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 38 0.013
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 38 0.013
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 38 0.013
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 37 0.022
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 36 0.030
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 36 0.030
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 36 0.039
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 36 0.052
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 35 0.068
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 35 0.068
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 35 0.068
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 35 0.068
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 35 0.090
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 35 0.090
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 35 0.090
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 34 0.12
AC024793-5|AAF60689.1| 79|Caenorhabditis elegans Hypothetical ... 34 0.12
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 34 0.16
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 34 0.16
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 33 0.21
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 33 0.21
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 33 0.21
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 33 0.21
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 33 0.21
Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical pr... 33 0.28
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 33 0.36
AC006663-2|AAF39900.2| 603|Caenorhabditis elegans Hypothetical ... 33 0.36
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 32 0.48
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 32 0.48
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.64
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 0.84
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 31 1.1
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 31 1.1
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 31 1.5
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 31 1.5
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 30 1.9
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 30 1.9
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 30 1.9
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 30 2.6
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 30 2.6
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 29 4.5
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 29 4.5
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 29 4.5
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 29 4.5
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 29 4.5
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 29 4.5
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 29 4.5
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 29 4.5
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 29 5.9
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 29 5.9
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 29 5.9
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 29 5.9
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 28 7.8
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 28 7.8
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 28 7.8
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 109 bits (263), Expect = 2e-24
Identities = 47/76 (61%), Positives = 60/76 (78%)
Frame = +1
Query: 178 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 357
+ KVYVG L ++A+ E+E+IF ++G IR VWVAR PPGFAFVE++D RDAED+VR LD
Sbjct: 1 MDAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALD 60
Query: 358 GTRCCGTRIRVEMSNG 405
G+R CG R RVE+S G
Sbjct: 61 GSRICGVRARVELSTG 76
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 109 bits (263), Expect = 2e-24
Identities = 47/76 (61%), Positives = 60/76 (78%)
Frame = +1
Query: 178 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 357
+ KVYVG L ++A+ E+E+IF ++G IR VWVAR PPGFAFVE++D RDAED+VR LD
Sbjct: 1 MDAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALD 60
Query: 358 GTRCCGTRIRVEMSNG 405
G+R CG R RVE+S G
Sbjct: 61 GSRICGVRARVELSTG 76
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 109 bits (263), Expect = 2e-24
Identities = 47/76 (61%), Positives = 60/76 (78%)
Frame = +1
Query: 178 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 357
+ KVYVG L ++A+ E+E+IF ++G IR VWVAR PPGFAFVE++D RDAED+VR LD
Sbjct: 1 MDAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALD 60
Query: 358 GTRCCGTRIRVEMSNG 405
G+R CG R RVE+S G
Sbjct: 61 GSRICGVRARVELSTG 76
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 78.2 bits (184), Expect = 7e-15
Identities = 41/74 (55%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-ARNPPGFAFVEFEDPRDAEDSVRGLDGT 363
KVYVGNL + + E+E IF KYG I+ V + + P FAFVEFED RDAED+VR DG
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 364 RCCGTRIRVEMSNG 405
G RIRVE + G
Sbjct: 70 EFDGRRIRVEFTRG 83
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 78.2 bits (184), Expect = 7e-15
Identities = 41/74 (55%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-ARNPPGFAFVEFEDPRDAEDSVRGLDGT 363
KVYVGNL + + E+E IF KYG I+ V + + P FAFVEFED RDAED+VR DG
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 364 RCCGTRIRVEMSNG 405
G RIRVE + G
Sbjct: 70 EFDGRRIRVEFTRG 83
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 62.9 bits (146), Expect = 3e-10
Identities = 31/74 (41%), Positives = 48/74 (64%)
Frame = +1
Query: 178 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 357
++ ++Y+G L + S+ +IE F YG IR+V + +N GF FVEF+D RDAED+V L+
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKN--GFGFVEFDDKRDAEDAVHDLN 57
Query: 358 GTRCCGTRIRVEMS 399
G G R+ ++ S
Sbjct: 58 GKELGGERVILDYS 71
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 62.9 bits (146), Expect = 3e-10
Identities = 31/74 (41%), Positives = 48/74 (64%)
Frame = +1
Query: 178 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 357
++ ++Y+G L + S+ +IE F YG IR+V + +N GF FVEF+D RDAED+V L+
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKN--GFGFVEFDDKRDAEDAVHDLN 57
Query: 358 GTRCCGTRIRVEMS 399
G G R+ ++ S
Sbjct: 58 GKELGGERVILDYS 71
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 62.9 bits (146), Expect = 3e-10
Identities = 31/74 (41%), Positives = 48/74 (64%)
Frame = +1
Query: 178 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 357
++ ++Y+G L + S+ +IE F YG IR+V + +N GF FVEF+D RDAED+V L+
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKN--GFGFVEFDDKRDAEDAVHDLN 57
Query: 358 GTRCCGTRIRVEMS 399
G G R+ ++ S
Sbjct: 58 GKELGGERVILDYS 71
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 62.1 bits (144), Expect = 5e-10
Identities = 29/69 (42%), Positives = 44/69 (63%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 366
+VY+G L AS ++E F YG + +V + +N GF FV+F+D RDA+D+V L+G
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDV-IMKN--GFGFVDFQDQRDADDAVHDLNGKE 59
Query: 367 CCGTRIRVE 393
CG R+ +E
Sbjct: 60 LCGERVILE 68
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 59.7 bits (138), Expect = 3e-09
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 11/81 (13%)
Frame = +1
Query: 187 KVYVGNLGTNASKYE-----------IEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDA 333
+VYVGN+ +A++ E IE +FS G I+++W+A+ PPGFAFV F+ A
Sbjct: 18 QVYVGNMPFDATEKELNNDALTIYDAIEAVFSVMGPIKSIWMAKRPPGFAFVTFKRTVHA 77
Query: 334 EDSVRGLDGTRCCGTRIRVEM 396
D+V+ L+G + C +VEM
Sbjct: 78 FDAVKYLNGKKICDLEAKVEM 98
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 59.3 bits (137), Expect = 4e-09
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 366
++Y+G + NA + ++E+ YG I N+ + GFAFV+FED RDAED+ LDG
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKT 59
Query: 367 CCGTRIR--VEMSNG 405
G+ +R VEM+ G
Sbjct: 60 MEGSSMRLVVEMARG 74
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 59.3 bits (137), Expect = 4e-09
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 366
++Y+G + NA + ++E+ YG I N+ + GFAFV+FED RDAED+ LDG
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKT 59
Query: 367 CCGTRIR--VEMSNG 405
G+ +R VEM+ G
Sbjct: 60 MEGSSMRLVVEMARG 74
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 59.3 bits (137), Expect = 4e-09
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 366
++Y+G + NA + ++E+ YG I N+ + GFAFV+FED RDAED+ LDG
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKT 59
Query: 367 CCGTRIR--VEMSNG 405
G+ +R VEM+ G
Sbjct: 60 MEGSSMRLVVEMARG 74
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 52.8 bits (121), Expect = 3e-07
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 354
V+VGN+ + S+ I IFSK GN+ ++ + + P G+ F+EF D + AE ++R L
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79
Query: 355 DGTRCCGTRIRVEMSNG 405
+G G +RV+ + G
Sbjct: 80 NGYELSGRILRVDSAAG 96
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 51.2 bits (117), Expect = 1e-06
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRN---VWVARNPPGFAFVEFEDPRDAEDSVRGLDG 360
VYV N G + +K +EK+F+K+GNI + + V GF FV F +P +AE +V+ L
Sbjct: 215 VYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 274
Query: 361 TRCCGTRIRVEM 396
+ GT +++ +
Sbjct: 275 STIEGTDLKLHV 286
Score = 35.9 bits (79), Expect = 0.039
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 357
+YV NL ++K F YGNI + V + GF FV FE P +A +V ++
Sbjct: 319 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMN 378
Query: 358 GTRCCGTRIRV 390
C + V
Sbjct: 379 SKMVCSKPLYV 389
Score = 33.5 bits (73), Expect = 0.21
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA----FVEFEDPRDAEDSVRGLD 357
+++ NL I FS +GNI + VA + GF+ FV FE A+++++ ++
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 358 GTRCCGTRIRV 390
G G ++ V
Sbjct: 182 GMLLAGKKVFV 192
Score = 31.5 bits (68), Expect = 0.84
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 354
+YVG+L + ++ + + FS G + ++ V R+ G+A+V F+ P DAE ++ +
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTM 93
Query: 355 DGTRCCGTRIRVEMS 399
+ G +R+ S
Sbjct: 94 NFEALHGKPMRIMWS 108
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 51.2 bits (117), Expect = 1e-06
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP------PGFAFVEFEDPRDAEDSVR 348
+V + NL N K +E+IFS YG I+NV + + G+ +VE+++ DAE S++
Sbjct: 134 RVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIK 193
Query: 349 GLDGTRCCGTRIRVEMSNG 405
+DG + G + VEM+ G
Sbjct: 194 HMDGGQIDGMAVHVEMTIG 212
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 50.8 bits (116), Expect = 1e-06
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRN---VWVARNPPGFAFVEFEDPRDAEDSVRGLDG 360
VYV N G + +K +EK+F+K+GNI + + V GF FV F +P +AE +V+ L
Sbjct: 155 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 214
Query: 361 TRCCGTRIRVEM 396
+ GT +++ +
Sbjct: 215 STIEGTDLKLHV 226
Score = 36.3 bits (80), Expect = 0.030
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 357
+YV NL ++K F YGNI + V + GF FV FE P +A +V ++
Sbjct: 259 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMN 318
Query: 358 GTRCCGTRIRVEMS 399
C + V ++
Sbjct: 319 SKMVCSKPLYVAIA 332
Score = 31.5 bits (68), Expect = 0.84
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 354
+YVG+L + ++ + + FS G + ++ V R+ G+A+V F+ P DAE ++ +
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTM 93
Query: 355 DGTRCCGTRIRVEMS 399
+ G +R+ S
Sbjct: 94 NFEALHGKPMRIMWS 108
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 50.8 bits (116), Expect = 1e-06
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRN---VWVARNPPGFAFVEFEDPRDAEDSVRGLDG 360
VYV N G + +K +EK+F+K+GNI + + V GF FV F +P +AE +V+ L
Sbjct: 152 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 211
Query: 361 TRCCGTRIRVEM 396
+ GT +++ +
Sbjct: 212 STIEGTDLKLHV 223
Score = 36.3 bits (80), Expect = 0.030
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 357
+YV NL ++K F YGNI + V + GF FV FE P +A +V ++
Sbjct: 256 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMN 315
Query: 358 GTRCCGTRIRVEMS 399
C + V ++
Sbjct: 316 SKMVCSKPLYVAIA 329
Score = 33.5 bits (73), Expect = 0.21
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA----FVEFEDPRDAEDSVRGLD 357
+++ NL I FS +GNI + VA + GF+ FV FE A+++++ ++
Sbjct: 59 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 118
Query: 358 GTRCCGTRIRV 390
G G ++ V
Sbjct: 119 GMLLAGKKVFV 129
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 50.8 bits (116), Expect = 1e-06
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRN---VWVARNPPGFAFVEFEDPRDAEDSVRGLDG 360
VYV N G + +K +EK+F+K+GNI + + V GF FV F +P +AE +V+ L
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 274
Query: 361 TRCCGTRIRVEM 396
+ GT +++ +
Sbjct: 275 STIEGTDLKLHV 286
Score = 36.3 bits (80), Expect = 0.030
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 357
+YV NL ++K F YGNI + V + GF FV FE P +A +V ++
Sbjct: 319 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMN 378
Query: 358 GTRCCGTRIRVEMS 399
C + V ++
Sbjct: 379 SKMVCSKPLYVAIA 392
Score = 33.5 bits (73), Expect = 0.21
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA----FVEFEDPRDAEDSVRGLD 357
+++ NL I FS +GNI + VA + GF+ FV FE A+++++ ++
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 358 GTRCCGTRIRV 390
G G ++ V
Sbjct: 182 GMLLAGKKVFV 192
Score = 31.5 bits (68), Expect = 0.84
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 354
+YVG+L + ++ + + FS G + ++ V R+ G+A+V F+ P DAE ++ +
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTM 93
Query: 355 DGTRCCGTRIRVEMS 399
+ G +R+ S
Sbjct: 94 NFEALHGKPMRIMWS 108
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 48.4 bits (110), Expect = 7e-06
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 354
VYVGN+ ++ EI F+ G++ NV + + P GFAFVEF + A+ +V L
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQL 67
Query: 355 DGTRCCGTRIRVEMSN 402
+G G +RV +N
Sbjct: 68 NGVAFNGRNLRVNYAN 83
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 47.6 bits (108), Expect = 1e-05
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 354
VYVGN ++ E+ FS G I NV + + P GFAF+EF + A+ +V +
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 355 DGTRCCGTRIRVEMSN 402
+G G +RV ++N
Sbjct: 67 NGAEFNGRPLRVNLAN 82
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Frame = +1
Query: 181 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVA-----RNPPGFAFVEFEDPRDAEDSV 345
SC +YVGNL + ++ ++F + G++R V + + P GF FVE+ DAE ++
Sbjct: 36 SCTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAELAL 95
Query: 346 RGLDGTRCCGTRIRVEMSNG 405
+ + TR IR + G
Sbjct: 96 QNISNTRMDDRVIRADWDAG 115
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 46.4 bits (105), Expect = 3e-05
Identities = 21/72 (29%), Positives = 41/72 (56%)
Frame = +1
Query: 184 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGT 363
C+++VGNL + E++++FS +G+I +++ GFAF+ + AE + +DG
Sbjct: 116 CRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFAFLRLDTRAHAESAKEAIDGR 173
Query: 364 RCCGTRIRVEMS 399
G ++RV +
Sbjct: 174 IIHGRQVRVRFA 185
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 46.4 bits (105), Expect = 3e-05
Identities = 21/72 (29%), Positives = 41/72 (56%)
Frame = +1
Query: 184 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGT 363
C+++VGNL + E++++FS +G+I +++ GFAF+ + AE + +DG
Sbjct: 116 CRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFAFLRLDTRAHAESAKEAIDGR 173
Query: 364 RCCGTRIRVEMS 399
G ++RV +
Sbjct: 174 IIHGRQVRVRFA 185
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 354
VYVGN ++ ++ FS+ GN+ NV + + P GFAFVEF + A+ +V
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 355 DGTRCCGTRIRVEMS 399
+G G +RV ++
Sbjct: 66 NGVDFNGRALRVNLA 80
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 42.3 bits (95), Expect = 5e-04
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV----ARNPPGFAFVEFEDPRDAEDSVRGLD 357
++VG + S+ ++ + F YG I+ + + A P G+AF+E+ D + + + D
Sbjct: 106 LFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKAD 165
Query: 358 GTRCCGTRIRVEMSNG 405
G + G R+ V+ G
Sbjct: 166 GIKVDGKRLVVDYERG 181
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 41.5 bits (93), Expect = 8e-04
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +1
Query: 196 VGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRGLDG 360
+ NL + ++ + F +YG+I +V + +R GF FV F + RDAE ++ DG
Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82
Query: 361 TRCCGTRIRVEMS 399
G +RV ++
Sbjct: 83 KLVDGRELRVTLA 95
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 41.5 bits (93), Expect = 8e-04
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +1
Query: 196 VGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRGLDG 360
+ NL + ++ + F +YG+I +V + +R GF FV F + RDAE ++ DG
Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82
Query: 361 TRCCGTRIRVEMS 399
G +RV ++
Sbjct: 83 KLVDGRELRVTLA 95
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 369
VYVGN+ + ++ +FS YG+I V + + +AFV +E A ++ ++G
Sbjct: 239 VYVGNISQQTTDADLRDLFSTYGDIAEVRIFKT-QRYAFVRYEKKECATKAIMEMNGKEM 297
Query: 370 CGTRIR 387
G ++R
Sbjct: 298 AGNQVR 303
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 354
V+VG+L + S ++ F+K+G + V R+ G+ FV F + ++AE+++ G+
Sbjct: 137 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 196
Query: 355 DG 360
+G
Sbjct: 197 NG 198
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Frame = +1
Query: 151 KMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEF 315
++ R R + +C+V NL ++ E+ +F K G + +++AR+ P GFAFV F
Sbjct: 167 QIDRNRSDENTCRVT--NLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTF 224
Query: 316 EDPRDAEDSVRGLDGTRCCGTRIRVE 393
E DA ++ L+ R ++VE
Sbjct: 225 ESRDDAARAIAELNDIRMYHMVLKVE 250
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Frame = +1
Query: 130 PPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPP 294
PP S S + S +Y+ L N + + ++ SKYGNI + N
Sbjct: 89 PPTSQHRASSNFNTTPSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCK 148
Query: 295 GFAFVEFEDPRDAEDSVRGLD 357
G+ FV+FE P+ A +V GL+
Sbjct: 149 GYGFVDFESPQAAAAAVDGLN 169
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 38.7 bits (86), Expect = 0.006
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Frame = +1
Query: 151 KMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEF 315
K S ++ + S +Y+G L S+ ++ +FS+YG + N+ + R+ GFAF+ +
Sbjct: 27 KKSWHQTYKDSAWIYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCY 86
Query: 316 EDPRDAEDSVRGLDGTRCCGTRIRVE 393
+D R +V +G IRV+
Sbjct: 87 KDQRSTILAVDNFNGISLHKRMIRVD 112
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 38.7 bits (86), Expect = 0.006
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = +1
Query: 169 EWDLS-CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRD 330
EWD + +V+ G+LG S + K F KY + + V R G+ FV F D D
Sbjct: 197 EWDENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSED 256
Query: 331 AEDSVRGLDG 360
++R +DG
Sbjct: 257 YVRAMREMDG 266
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 37.9 bits (84), Expect = 0.010
Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRGL 354
V+V N+ A++ ++ FS+YG I+N+ + + G+A VE+E ++A +++
Sbjct: 57 VFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQS 116
Query: 355 DGTRCCGTRIRVE 393
+ T G ++V+
Sbjct: 117 NDTDLLGQNVKVD 129
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 37.9 bits (84), Expect = 0.010
Identities = 18/79 (22%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Frame = +1
Query: 175 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIR----NVWVARNPPGFAFVEFEDPRDAEDS 342
D + K+++G L ++ +++++ +G ++ NV N G+AF E+ DP + +
Sbjct: 288 DSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQA 347
Query: 343 VRGLDGTRCCGTRIRVEMS 399
+ GL+G + ++ V+++
Sbjct: 348 IAGLNGMQLGDKQLVVQLA 366
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 37.9 bits (84), Expect = 0.010
Identities = 18/79 (22%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Frame = +1
Query: 175 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIR----NVWVARNPPGFAFVEFEDPRDAEDS 342
D + K+++G L ++ +++++ +G ++ NV N G+AF E+ DP + +
Sbjct: 288 DSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQA 347
Query: 343 VRGLDGTRCCGTRIRVEMS 399
+ GL+G + ++ V+++
Sbjct: 348 IAGLNGMQLGDKQLVVQLA 366
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 37.9 bits (84), Expect = 0.010
Identities = 18/79 (22%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Frame = +1
Query: 175 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIR----NVWVARNPPGFAFVEFEDPRDAEDS 342
D + K+++G L ++ +++++ +G ++ NV N G+AF E+ DP + +
Sbjct: 263 DSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQA 322
Query: 343 VRGLDGTRCCGTRIRVEMS 399
+ GL+G + ++ V+++
Sbjct: 323 IAGLNGMQLGDKQLVVQLA 341
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 37.9 bits (84), Expect = 0.010
Identities = 18/79 (22%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Frame = +1
Query: 175 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIR----NVWVARNPPGFAFVEFEDPRDAEDS 342
D + K+++G L ++ +++++ +G ++ NV N G+AF E+ DP + +
Sbjct: 266 DSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQA 325
Query: 343 VRGLDGTRCCGTRIRVEMS 399
+ GL+G + ++ V+++
Sbjct: 326 IAGLNGMQLGDKQLVVQLA 344
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 37.5 bits (83), Expect = 0.013
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGL 354
KV+V N+ A+ E++ +FSK+G + +V + P G AFV+F+ A+ V
Sbjct: 684 KVFVRNVHFQATDDELKALFSKFGTVTSVRRVTHKDGKPKGIAFVDFDTEASAQKCVASG 743
Query: 355 DGTRCCGTRIRVEMSN 402
D + V +SN
Sbjct: 744 DKLMLRERELEVALSN 759
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 37.5 bits (83), Expect = 0.013
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVA---RNPPGFAFVEFEDPRDAEDSVRGLD 357
+++V N+ +++ +F K+G + +V + R GF FV E P+DAE + + L
Sbjct: 154 RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELH 213
Query: 358 GTRCCGTRIRV 390
G+ G +I V
Sbjct: 214 GSMIEGRKIEV 224
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 37.5 bits (83), Expect = 0.013
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVA---RNPPGFAFVEFEDPRDAEDSVRGLD 357
+++V N+ +++ +F K+G + +V + R GF FV E P+DAE + + L
Sbjct: 154 RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELH 213
Query: 358 GTRCCGTRIRV 390
G+ G +I V
Sbjct: 214 GSMIEGRKIEV 224
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 36.7 bits (81), Expect = 0.022
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRGL 354
VYVGN+ A+ EIE+ F G++ V + + +P GFA+VEF + ++++
Sbjct: 80 VYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALAMT 139
Query: 355 DGTRCCGTRIRVE 393
D + G +I+V+
Sbjct: 140 D-SLLRGRQIKVD 151
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 36.3 bits (80), Expect = 0.030
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 357
V+V N G + + ++ +FSK+G I + V + P GF FV F D A +V L+
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLN 299
Query: 358 GTRCCGTRIRVEM 396
+ GT ++ +
Sbjct: 300 DSILEGTDCKLSV 312
Score = 31.9 bits (69), Expect = 0.64
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 354
+Y+G+L + S+ + + FS G + ++ V R+ G+A+V F+ P DAE ++ +
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTM 118
Query: 355 DGTRCCGTRIRVEMS 399
+ G +R+ S
Sbjct: 119 NFEVIHGRPMRIMWS 133
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 36.3 bits (80), Expect = 0.030
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 357
V+V N G + + ++ +FSK+G I + V + P GF FV F D A +V L+
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLN 299
Query: 358 GTRCCGTRIRVEM 396
+ GT ++ +
Sbjct: 300 DSILEGTDCKLSV 312
Score = 31.9 bits (69), Expect = 0.64
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 354
+Y+G+L + S+ + + FS G + ++ V R+ G+A+V F+ P DAE ++ +
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTM 118
Query: 355 DGTRCCGTRIRVEMS 399
+ G +R+ S
Sbjct: 119 NFEVIHGRPMRIMWS 133
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 35.9 bits (79), Expect = 0.039
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = +1
Query: 181 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSV 345
S +Y+ L N + + ++ SKYGNI + N G+ FV+FE P+ A +V
Sbjct: 80 STNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAV 139
Query: 346 RGLD 357
GL+
Sbjct: 140 DGLN 143
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 35.5 bits (78), Expect = 0.052
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP--GFAFVEFEDPRDAEDSVRGLDG 360
+Y+ NL + E+ +IF K+G +R + V G AFV +ED DA+ + L G
Sbjct: 21 LYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKTACEHLSG 79
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 35.1 bits (77), Expect = 0.068
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFEDPRDAEDSVRGLD 357
++V NL ++ + ++FS++G I NV + R+ G+AFV + +A +++ L+
Sbjct: 376 LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAMLSLN 435
Query: 358 GTRCCGTRIRV 390
GT G ++V
Sbjct: 436 GTNLAGKTLQV 446
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 354
+YV + + + +E+E IF +G I + + G FV F+ +A+ +++ L
Sbjct: 130 LYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTL 189
Query: 355 DGT--RCCGTRIRVEMSN 402
+G+ C +I V+ +N
Sbjct: 190 NGSIPSGCSEQITVKFAN 207
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 35.1 bits (77), Expect = 0.068
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVA---RNPPGFAFVEFEDPRDAEDSVRGLD 357
+++V N+ + ++ +F K G + +V + R GF FV ++P DA+ + +
Sbjct: 101 RLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFN 160
Query: 358 GTRCCGTRIRVEMS 399
GT G R+ V ++
Sbjct: 161 GTTIEGRRVEVNLA 174
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 35.1 bits (77), Expect = 0.068
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 369
++ N+ +I+ IFS++ +R V N FAF+E+E +E + + LD R
Sbjct: 145 LFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALDNFRI 204
Query: 370 CGTR 381
T+
Sbjct: 205 TPTQ 208
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 35.1 bits (77), Expect = 0.068
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVA---RNPPGFAFVEFEDPRDAEDSVRGLD 357
+++V N+ + ++ +F K G + +V + R GF FV ++P DA+ + +
Sbjct: 101 RLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFN 160
Query: 358 GTRCCGTRIRVEMS 399
GT G R+ V ++
Sbjct: 161 GTTIEGRRVEVNLA 174
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 34.7 bits (76), Expect = 0.090
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG-----FAFVEFEDPRDAEDSVRGL 354
++V L + ++E IFS++G I N + R+ +AF+EF++ + E + +
Sbjct: 243 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKM 302
Query: 355 DGTRCCGTRIRVEMS 399
D RI V+ S
Sbjct: 303 DNVLIDDRRIHVDFS 317
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 34.7 bits (76), Expect = 0.090
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG-----FAFVEFEDPRDAEDSVRGL 354
++V L + ++E IFS++G I N + R+ +AF+EF++ + E + +
Sbjct: 243 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKM 302
Query: 355 DGTRCCGTRIRVEMS 399
D RI V+ S
Sbjct: 303 DNVLIDDRRIHVDFS 317
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 34.7 bits (76), Expect = 0.090
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG-----FAFVEFEDPRDAEDSVRGL 354
++V L + ++E IFS++G I N + R+ +AF+EF++ + E + +
Sbjct: 174 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKM 233
Query: 355 DGTRCCGTRIRVEMS 399
D RI V+ S
Sbjct: 234 DNVLIDDRRIHVDFS 248
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = +1
Query: 184 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFV 309
C+++VGNL + E++++FS +G+I +++ GFAF+
Sbjct: 116 CRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFAFL 155
>AC024793-5|AAF60689.1| 79|Caenorhabditis elegans Hypothetical
protein Y48G1BL.4 protein.
Length = 79
Score = 34.3 bits (75), Expect = 0.12
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSV 345
+VY+G AS + E F YG + + + +N G +F+D DA+D +
Sbjct: 3 RVYIGRFPNRASDRDAEHFFCDYGKLPDA-IMKNVFGVGCKDFQDQSDADDII 54
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 33.9 bits (74), Expect = 0.16
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRG 351
+VYV ++ + S+ +++ +F +G I +AR P GF ++EF + +++ G
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAG 267
Query: 352 LDGTRCCGTRIRV 390
++ G +RV
Sbjct: 268 MNMFDLGGQYLRV 280
Score = 32.3 bits (70), Expect = 0.48
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG-----FAFVEFEDPRDAEDSVRG 351
++YVG++ + + + F +G I+++ ++ +P FAFVE+E P A +
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 352 LDGTRCCGTRIRV 390
++G G ++V
Sbjct: 163 MNGQMLGGRNLKV 175
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 33.9 bits (74), Expect = 0.16
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRG 351
+VYV ++ + S+ +++ +F +G I +AR P GF ++EF + +++ G
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAG 267
Query: 352 LDGTRCCGTRIRV 390
++ G +RV
Sbjct: 268 MNMFDLGGQYLRV 280
Score = 32.3 bits (70), Expect = 0.48
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG-----FAFVEFEDPRDAEDSVRG 351
++YVG++ + + + F +G I+++ ++ +P FAFVE+E P A +
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 352 LDGTRCCGTRIRV 390
++G G ++V
Sbjct: 163 MNGQMLGGRNLKV 175
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 33.5 bits (73), Expect = 0.21
Identities = 13/43 (30%), Positives = 28/43 (65%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 318
++ NL +A+ +E +F+++ ++++ + N PG AFVEF+
Sbjct: 134 LFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFD 176
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 33.5 bits (73), Expect = 0.21
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVR 348
K++VG L +N + + + +S++G I ++ V R+P GF FV F + + +++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 33.5 bits (73), Expect = 0.21
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Frame = +1
Query: 178 LSCKVYVGNLGTNA-SKYEIEKIFSKYGNIRNV-WVARNPPGFAFVEFEDPRDAEDSVRG 351
+ +V++GN+ ++ +I ++F +G I V + A+ GF FV+F + A++S R
Sbjct: 81 IRARVFIGNIARAIITRDDIIELFRPFGKIIAVNYFAQQ--GFGFVQFNEAGSADESCRS 138
Query: 352 LDG---TRCC 372
L+G CC
Sbjct: 139 LNGMSWKACC 148
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 33.5 bits (73), Expect = 0.21
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVR 348
K++VG L +N + + + +S++G I ++ V R+P GF FV F + + +++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 33.5 bits (73), Expect = 0.21
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVR 348
K++VG L +N + + + +S++G I ++ V R+P GF FV F + + +++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
>Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical
protein T11G6.8 protein.
Length = 408
Score = 33.1 bits (72), Expect = 0.28
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEK----IFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSV-RGL 354
+Y+GNLG + ++ EK F +YG+IR + V G AF+EF AE + R
Sbjct: 237 LYIGNLGPSGAQQVTEKDLNDFFYQYGDIRCLRVL-TEKGCAFIEFTTREAAERAAERSF 295
Query: 355 DGTRCCGTRIRV 390
+ T G R+ +
Sbjct: 296 NKTFIKGKRLTI 307
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 32.7 bits (71), Expect = 0.36
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRG 351
+VYV ++ + S+ +++ +F +G I +AR P GF ++EF + +++ G
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAG 267
Query: 352 LD 357
++
Sbjct: 268 MN 269
Score = 32.3 bits (70), Expect = 0.48
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG-----FAFVEFEDPRDAEDSVRG 351
++YVG++ + + + F +G I+++ ++ +P FAFVE+E P A +
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 352 LDGTRCCGTRIRV 390
++G G ++V
Sbjct: 163 MNGQMLGGRNLKV 175
>AC006663-2|AAF39900.2| 603|Caenorhabditis elegans Hypothetical
protein H24K24.4 protein.
Length = 603
Score = 32.7 bits (71), Expect = 0.36
Identities = 16/59 (27%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKY-GNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 360
++++ N+ T + +K+ K G++++ V R+ +A+V FE P DA+ ++ +DG
Sbjct: 28 RIHIKNIPTFIGFKQFKKVLEKILGDVKSKKV-RHMSDYAYVTFETPEDAQKAINLVDG 85
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 32.3 bits (70), Expect = 0.48
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAE 336
K+++G L + + F ++G + V R+P GF F+ F DP +
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVD 100
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 32.3 bits (70), Expect = 0.48
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAE 336
K+++G L + + F ++G + V R+P GF F+ F DP +
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVD 100
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.9 bits (69), Expect = 0.64
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Frame = +1
Query: 136 FSIKTKMSR--YREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPP 294
F ++++MS E + +YVG L S+ + ++ + G + +V V N
Sbjct: 5 FFLRSEMSAGPIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQ 64
Query: 295 GFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSN 402
GF FVEF DA+ +++ L+ + G I+V ++
Sbjct: 65 GFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKAS 100
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.5 bits (68), Expect = 0.84
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRGL 354
+YVG L S+ + ++ + G + +V V N GF FVEF DA+ +++ L
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 355 DGTRCCGTRIRVEMSN 402
+ + G I+V ++
Sbjct: 75 NMIKLYGKPIKVNKAS 90
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 31.5 bits (68), Expect = 0.84
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNI---RNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 357
+YVGNL + ++ I +F++ G++ + ++ N P +AFVEF D A +++ ++
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP-YAFVEFSDHGQASQALQTMN 105
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRG 351
++++ NL + +++ +F KYG + V V + GFA VEF P A +
Sbjct: 280 RLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSA 339
Query: 352 LDG 360
LDG
Sbjct: 340 LDG 342
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +1
Query: 127 YPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKY-GNIRNVWVARNPP--- 294
YPP T ++ E + VYVGNL E+ ++F+ Y G + +A P
Sbjct: 146 YPPLPADTDSAKVEE--IRRTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALP 203
Query: 295 -GFAFVEF 315
+A+VEF
Sbjct: 204 CAYAYVEF 211
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +1
Query: 127 YPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKY-GNIRNVWVARNPP--- 294
YPP T ++ E + VYVGNL E+ ++F+ Y G + +A P
Sbjct: 146 YPPLPADTDSAKVEE--IRRTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALP 203
Query: 295 -GFAFVEF 315
+A+VEF
Sbjct: 204 CAYAYVEF 211
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 241 IFSKYGNIRNVWVA---RNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMS 399
+F K G + +V + R GF FV ++P DA+ + +GT G R+ V ++
Sbjct: 1 MFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 56
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSV 345
V++GN+ N++ EIE+ F G I + + FA++EF+D E+++
Sbjct: 57 VFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENAL 113
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSV 345
V++GN+ N++ E+E+ F G+I + + FA++EF+D E+++
Sbjct: 63 VFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENAL 119
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Frame = +1
Query: 124 FYPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVA---RNPP 294
F P S+K K + + ++YV N+ + + ++ +F YG + +V + R
Sbjct: 32 FTMPISVKPKTREPASFTDN-RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSK 90
Query: 295 GFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRV 390
GF FV + E + L + G I V
Sbjct: 91 GFGFVTLDSIESCEKARAALHESHVQGRIIEV 122
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFE 318
VYVGN+ ++ EIE+ F+ G + V + ++ FAFVEF+
Sbjct: 48 VYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQ 95
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Frame = +1
Query: 124 FYPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVA---RNPP 294
F P S+K K + + ++YV N+ + + ++ +F YG + +V + R
Sbjct: 32 FTMPISVKPKTREPASFTDN-RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSK 90
Query: 295 GFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRV 390
GF FV + E + L + G I V
Sbjct: 91 GFGFVTLDSIESCEKARAALHESHVQGRIIEV 122
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA----RNPPGFAFVEFEDPRDAEDSVRGLD 357
V V NL + I IF +G I + + R GFA + F + DA+ S L+
Sbjct: 129 VLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITFRNADDAQKSCEQLN 188
Query: 358 GTRCCGTRIRVEM 396
G IR+ +
Sbjct: 189 NFELAGRCIRLSI 201
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA----RNPPGFAFVEFEDPRDAEDSVRGLD 357
V V NL + I IF +G I + + R GFA + F + DA+ S L+
Sbjct: 274 VLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITFRNADDAQKSCEQLN 333
Query: 358 GTRCCGTRIRVEM 396
G IR+ +
Sbjct: 334 NFELAGRCIRLSI 346
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 297
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 297
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 297
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 297
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 297
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 297
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 297
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +1
Query: 190 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 354
V+VG+L + ++ + F K+G + + R+ G+ FV + DAE ++ +
Sbjct: 134 VFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEM 193
Query: 355 DG 360
+G
Sbjct: 194 NG 195
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +1
Query: 196 VGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGLDG 360
V NL + ++ ++ +F ++G I + + P GF F+ F DA + L
Sbjct: 80 VFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIEDATAARDKLCN 139
Query: 361 TRCCGTRIRVEMS 399
T G +IRV+ S
Sbjct: 140 TDLDGHKIRVDFS 152
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSV 345
K+++G L + + ++ FS++G + + V R+P GF FV F AE ++
Sbjct: 50 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAM 107
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSV 345
K+++G L + + ++ FS++G + + V R+P GF FV F AE ++
Sbjct: 70 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAM 127
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSV 345
K+++G L + + ++ FS++G + + V R+P GF FV F AE ++
Sbjct: 71 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAM 128
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 181 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 288
S KV+VG L + + +I FS+YG ++ W +++
Sbjct: 87 SRKVFVGGLPSCVKESDILNFFSRYGRLQVDWPSKH 122
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEF 315
K++VG + + ++ F++YG + V + GFAFVEF
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEF 77
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = +1
Query: 187 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEF 315
K++VG + + ++ F++YG + V + GFAFVEF
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEF 77
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,209,281
Number of Sequences: 27780
Number of extensions: 314473
Number of successful extensions: 972
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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