Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_C24
(1312 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 31 0.35
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 3.3
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 31.1 bits (67), Expect = 0.35
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = -1
Query: 250 GGEXG*RXGVXGXGEXGXEXEXGXXGGGXXGXGXRGXAEGG 128
GG G R G G G G GG G RG A+GG
Sbjct: 30 GGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Score = 30.3 bits (65), Expect = 0.62
Identities = 16/41 (39%), Positives = 16/41 (39%)
Frame = -1
Query: 250 GGEXG*RXGVXGXGEXGXEXEXGXXGGGXXGXGXRGXAEGG 128
GG G G G G G GG G G RG A GG
Sbjct: 16 GGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGG 56
Score = 29.9 bits (64), Expect = 0.81
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = -1
Query: 250 GGEXG*RXGVXGXGEXGXEXEXGXXGGGXXGXGXRGXAEGG 128
GG G R G G G G G GG G G GG
Sbjct: 26 GGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 1.4
Identities = 28/106 (26%), Positives = 34/106 (32%), Gaps = 3/106 (2%)
Frame = +3
Query: 129 PPSAXPLXPXP---LXPPPXXPXSXSLPXSPXPXTPXLXPXSPPXXLIXXNXLXSXKXXX 299
PPSA P P P L PP P S+P P + +PP I + +
Sbjct: 124 PPSA-PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPP---IPSSLPPPAQPAA 179
Query: 300 PLSSXPPHPXXXPXXYXPTXKXKLPXXLXLPXXXXXLXXPXXXPPP 437
P+ S PP P P P L P PP
Sbjct: 180 PVKS-PPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPP 224
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 126 QPPSAXPLXPXPLXPPPXXPXSXSLPXSPXPXTPXLXPXSPP 251
+PP++ P P P PPP + +P P L P + P
Sbjct: 138 RPPTSAP--PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 1.4
Identities = 27/122 (22%), Positives = 35/122 (28%), Gaps = 1/122 (0%)
Frame = +3
Query: 75 PXPXNXIXXXSXXXXLTQPPSAXPLXPXPLXPPPXXPXSXSLPXSPXPXTPXLXPXSPPX 254
P P + S + P S P P P PP P +P P P + P P
Sbjct: 1051 PVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPP-VPAPSGIPPVPKP-SVAAPPVPKPS 1108
Query: 255 XLIXXNXLXSXKXXXPLSSXPPHPXXXPXXYXPTXKXKL-PXXLXLPXXXXXLXXPXXXP 431
+ S P S P P P K + + P + P
Sbjct: 1109 VAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAA 1168
Query: 432 PP 437
PP
Sbjct: 1169 PP 1170
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 2.5
Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Frame = +3
Query: 45 SPPLXXXFXXPXPXNXIXXXSXXXXLTQPPSAXPLXP---XPLXPPPXXPXSXSLPXSPX 215
+PP P S ++ PP+ P P P PP S P P
Sbjct: 360 APPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTP--PV 417
Query: 216 PXTPXLXPXSPP 251
P P L P +PP
Sbjct: 418 PTPPSLPPSAPP 429
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +3
Query: 135 SAXPLXPXPLXPPPXXPXSXSLPXSPXPXTPXLXPXSPP 251
S P+ P PP P SLP S P P P +PP
Sbjct: 413 STPPVPTPPSLPPSAPP---SLPPSAPPSLPMGAPAAPP 448
Score = 27.1 bits (57), Expect = 5.7
Identities = 21/70 (30%), Positives = 25/70 (35%)
Frame = +3
Query: 129 PPSAXPLXPXPLXPPPXXPXSXSLPXSPXPXTPXLXPXSPPXXLIXXNXLXSXKXXXPLS 308
PPS P P P PP P SLP P P L P +P + +
Sbjct: 420 PPSLPPSAP-PSLPPSAPP---SLPMGA-PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Query: 309 SXPPHPXXXP 338
+ PP P P
Sbjct: 475 APPPAPAPAP 484
Score = 26.6 bits (56), Expect = 7.6
Identities = 21/102 (20%), Positives = 29/102 (28%)
Frame = +2
Query: 131 PLGXPSTPXXXPPPPLXPXLSFXSXLTXPXNPXSSXLFSPXXTHXXKXSXFXQTXQXPLL 310
P+G S+ PPPP P + + P S+ P +
Sbjct: 326 PIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP--PPPPPRSAPSTGRQPPPLSSSR 383
Query: 311 XTXSPXTPPPXLXSNXKKXTPPNXXPPXXXTXPXXXLXXXPP 436
+P PPP + PP T P PP
Sbjct: 384 AVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPP 425
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 3.3
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Frame = +3
Query: 45 SPPLXXXFXXPXPXNXIXXXSXXXXLTQPPSAXPLXP-XPLXPPPXXPXSXSLPXSPXP 218
+PP+ P + + PPSA P+ P PPP P S S P P P
Sbjct: 1689 TPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPAS-SAPSVPNP 1746
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,295,272
Number of Sequences: 5004
Number of extensions: 15065
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 717371258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -