Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_C23
(932 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb... 66 5e-12
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 42 1e-04
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 37 0.004
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 29 1.2
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho... 28 2.2
SPBC6B1.12c |sus1||SAGA complex subunit Sus1 |Schizosaccharomyce... 27 3.8
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo... 27 3.8
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-... 27 5.0
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 6.6
>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 351
Score = 66.5 bits (155), Expect = 5e-12
Identities = 56/176 (31%), Positives = 85/176 (48%), Gaps = 14/176 (7%)
Frame = +1
Query: 217 MLWSWGANSHGQLGLCYVNEQVEKPTKINIDFHGNKVKQIACGGGHTLLLDTEGKLYSCG 396
ML S G+N + QLGL +E V P + D +++I+CGG HTLLLD + +L++CG
Sbjct: 1 MLLSLGSNGNFQLGLNN-DEDVYSPQIVPFD---RAIEKISCGGNHTLLLDEDSQLWACG 56
Query: 397 WNNNLQTATE-KE--VNSFERTW-----RLSGIVFTNIACGWDFSCGV-TDDNFLFVWGS 549
N Q E KE N + R+S + + CGW+FS V D + G
Sbjct: 57 DNRKGQCGYEVKEPLYNPLSPDYLRIFTRVSHERWVFLTCGWEFSVIVHADRRRVCSCGE 116
Query: 550 NYYGQLGLPRNEFPDSIKPIRL-----QVNACEVSMGLRHTAIVNSKGEVWITGCG 702
G+LG ++ I + + ++S GLRH V ++G ++ GCG
Sbjct: 117 GLSGELGQGNRSNSQGLREIDIPYLDDKEFIIDISAGLRHWICVTNEGNLY--GCG 170
Score = 30.7 bits (66), Expect = 0.31
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 325 VKQIACGGGHTLLLDTEGKLYSCGWNNNLQTATEKEVNSFE-RTWRLSGIVFTNIACGWD 501
+ QIA G H +L +G + GWN + + + + + ++ +T +L G + +A G+
Sbjct: 282 IVQIASGTEHNILRTKKGSVLIYGWNEHGNASNDDKRDVYDAKTLQLPGWAYI-VAAGYA 340
Query: 502 FSCGVTDDN 528
S V ++N
Sbjct: 341 TSWIVIEEN 349
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 41.9 bits (94), Expect = 1e-04
Identities = 42/183 (22%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Frame = +1
Query: 220 LWSWGANSHGQLGLCYVNEQVEKPTKINIDFHGNKVK--QIACGGGHTLLLDTEGKLYSC 393
++ +G+ S +LG+ V ++N +KV +A GG H+ L +G++Y+
Sbjct: 73 VYVFGSGSMNELGMGEEEMDVVYRPRLNPILSTDKVGVVDLAVGGMHSAALSHDGRVYTW 132
Query: 394 GWNNNLQ----TATEKEVNS-------FERT-----WRLSGIVFTNIACGWDFSCGVTDD 525
G N++ T +K+ N E T LS + T + C + + +TD+
Sbjct: 133 GVNDDYALGRLTKDQKDENGDKVDNDLLEGTPSKVEGALSHLRVTKVICSDNLTAAITDN 192
Query: 526 NFLFVWGSNYY--GQLGLPRNEFPDSIKPIRLQV-NACEVSMGLRHTAIVNSKGEVWITG 696
F WG+ G LG ++ + +P ++++ C+++ G H + + G+V+ G
Sbjct: 193 GCCFTWGTFRCSDGVLGYSDSQ-KRTAEPTQMRLPEICQLATGTDHIIALTTTGKVYTWG 251
Query: 697 CGK 705
G+
Sbjct: 252 NGQ 254
Score = 38.3 bits (85), Expect = 0.002
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Frame = +1
Query: 334 IACGGGHTLLLDTEGKLYSCGWNNNLQTATEKE-------VNSFERTWRLSGIVFTNIAC 492
+ G H+ +D +G++Y+ G N Q E E + L G +I
Sbjct: 284 VGAGSYHSFAIDNKGRVYAWGLNITRQCGIEVEDEEEGAVITKPTLVDALEGYNVKSITG 343
Query: 493 GWDFSCGVTDDNFLFVWGSNYYGQLGLPRNEFPDSI 600
G + + +D + WG + QLG+P N P+++
Sbjct: 344 GEHHTLALLEDGRVLAWGRDDRHQLGIPDNALPETV 379
Score = 31.9 bits (69), Expect = 0.13
Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 8/144 (5%)
Frame = +1
Query: 289 PTKINIDFHGNKVKQIACGGGHTLLLDTEGKLYSCGW---NNNLQTATEKEVNSFERT-W 456
P+K+ +V ++ C T + G ++ G ++ + ++ + + E T
Sbjct: 164 PSKVEGALSHLRVTKVICSDNLTAAITDNGCCFTWGTFRCSDGVLGYSDSQKRTAEPTQM 223
Query: 457 RLSGIVFTNIACGWDFSCGVTDDNFLFVWGSNYYGQLG---LPRNEFPD-SIKPIRLQVN 624
RL I +A G D +T ++ WG+ QLG L R + +P+ L+ N
Sbjct: 224 RLPEIC--QLATGTDHIIALTTTGKVYTWGNGQQFQLGRRMLERRRLQGLTPQPLALK-N 280
Query: 625 ACEVSMGLRHTAIVNSKGEVWITG 696
V G H+ +++KG V+ G
Sbjct: 281 IISVGAGSYHSFAIDNKGRVYAWG 304
Score = 29.5 bits (63), Expect = 0.71
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 325 VKQIACGGGHTLLLDTEGKLYSCGWNNNLQ 414
V Q+ CG H L + ++GK+YS G N +
Sbjct: 402 VIQVVCGTHHNLAVTSDGKVYSWGSAENYE 431
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 37.1 bits (82), Expect = 0.004
Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 14/170 (8%)
Frame = +1
Query: 220 LWSWGANSHGQLGLCYVNEQVEKPTKINID------FHGNKVKQIACGGGHTLLLDTEGK 381
++SWG N G+LGL N++++K I I F ++ +A G +++ T+
Sbjct: 268 IYSWGKNGSGELGLS--NDELKKDDPIQITPRRISAFKDYQIIGMAAGKSYSVAW-TDTD 324
Query: 382 LYSCGWNNNLQTATEKEVNSFERTWRLSGIV--FTNIACGWDFSCGVTDDNFLFVWGSNY 555
+YS G NN Q ++ R++G++ + C + + +N + + +
Sbjct: 325 IYSWGLNNG-QLGISDHISVVSTPRRVAGLLSPVIHAVCTTRATICLLQNNSIIAFCN-- 381
Query: 556 YGQLGLPRN-EFPDSIK----PIRL-QVNACEVSMGLRHTAIVNSKGEVW 687
Y Q+ LP N +F S+K P+ L + N ++ A++ GEV+
Sbjct: 382 YNQVKLPFNVDFGSSLKVTKHPLSLTRFNVRKLLASENKLAVLTELGEVY 431
Score = 30.3 bits (65), Expect = 0.41
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 8/124 (6%)
Frame = +1
Query: 268 VNEQVEKPTKINIDFHGNKVKQIACGGGHTLLLDTEGK--LYSCGWN--NNLQTATEKEV 435
+ Q E PT + F +K+ + H+++L E +Y CG + T+ +
Sbjct: 179 LKNQTESPTSGQL-FSRDKILDVQASKFHSVVLTDEPSQNVYVCGIGAGGRIGFNTDVQY 237
Query: 436 NSFERTWRLSGIVFTNIACGWDFSCGVTDDNFLFVWGSNYYGQLGLPRNEF----PDSIK 603
N + ++ I+ S +T ++ WG N G+LGL +E P I
Sbjct: 238 NFIPIPGIIHKVI--QISVSHTHSLALTKFGSIYSWGKNGSGELGLSNDELKKDDPIQIT 295
Query: 604 PIRL 615
P R+
Sbjct: 296 PRRI 299
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 574 PRNEFPDSIKPIRLQVNACEVSMGLRHTAIV 666
PRN DSI+ +++ + A ++GL HT ++
Sbjct: 481 PRNICIDSIEDVKVLIRAYRENLGLHHTPLI 511
>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
phospholipase C |Schizosaccharomyces pombe|chr
2|||Manual
Length = 424
Score = 27.9 bits (59), Expect = 2.2
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = -1
Query: 908 EKFWDIYLFVKVTDHVYCHPIHTKPFHQSSM 816
++ W IY F ++ + V C+ ++++ FH ++M
Sbjct: 48 QEVWSIYDFQEIRNLVSCNLVYSRFFHSAAM 78
>SPBC6B1.12c |sus1||SAGA complex subunit Sus1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 108
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 343 GGGHTLLLDTEGKLYSCGWNNNLQTATEKEVNS 441
G L + E KL SCGW L+ T VNS
Sbjct: 23 GDYERLANELEYKLESCGWTTQLRDYTRGIVNS 55
>SPBC56F2.11 |met6||homoserine
O-acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 489
Score = 27.1 bits (57), Expect = 3.8
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = -3
Query: 747 SEDSLSLPKAKLSMLPTASYPDLT----LRINNCCMPQAHRHFTSIYLQSYWLYAIRKFI 580
SE +L+ P + +S LP+ T L ++ A+ +F++ QSY Y +KF+
Sbjct: 299 SESALNSPASSVSSLPSLGASQTTDSSSLNQSSLLRRPANTYFSA---QSYLRYQAKKFV 355
Query: 579 SR 574
SR
Sbjct: 356 SR 357
>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
[UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -2
Query: 202 GFF*HTTFPVLFSYRVIVLAIQLSNYKSNTVCQIISISXLYYLTHLL 62
GFF HT FP YRV+ + ++ N C ++ Y H L
Sbjct: 182 GFFLHTPFPSSEIYRVLPVRNEILEGVLN--CDLVGFHTYDYARHFL 226
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 6.6
Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 3/107 (2%)
Frame = +1
Query: 313 HGNKVKQIACGGGHTLLLDTEGKL--YSCGWNNNLQTATEKEVNSFERTWRLSGIVFTNI 486
H K K + G L L G L Y G ++ + +NS + ++
Sbjct: 176 HTFKNKVVKALSGTALALSIAGVLGFYVIGMEHSTYLTRQVFINSVPSLQHMGELLQCIA 235
Query: 487 ACGWDFSCGVTDDNFLFVWGSNYYGQLGLPRN-EFPDSIKPIRLQVN 624
G + G+T L W SN+ LG N E +S++ R N
Sbjct: 236 FTG---AIGITQPKVLVAWASNFAWILGFITNKEIENSLESFRKHSN 279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,742,540
Number of Sequences: 5004
Number of extensions: 79371
Number of successful extensions: 220
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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