Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_C21
         (911 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest...    34   0.62 
X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest...    34   0.62 
BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.        31   7.7  
BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.        31   7.7  
AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.       31   7.7  

>X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest
            subunit protein.
          Length = 1970

 Score = 34.3 bits (75), Expect = 0.62
 Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 1/104 (0%)
 Frame = +1

Query: 595  NPTGL*DTRRFPPGNSLVRSPVPTLPLT-GYLSAFLPFGXRGAFSXLTL*VSXFGVXRSL 771
            +P+   D   F PG S   SP P  P + G  S ++P    GA S      S     RS 
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPGGAMSPSYSPTSPAYEPRSP 1605

Query: 772  QXGLCAXPPFNPTGGPYPVISX*IHPVKPXFSPXAXPLVPGXPN 903
                   P ++PT   Y   S    P  P +SP +    P  P+
Sbjct: 1606 GGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPS 1649


>X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest
            subunit protein.
          Length = 1970

 Score = 34.3 bits (75), Expect = 0.62
 Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 1/104 (0%)
 Frame = +1

Query: 595  NPTGL*DTRRFPPGNSLVRSPVPTLPLT-GYLSAFLPFGXRGAFSXLTL*VSXFGVXRSL 771
            +P+   D   F PG S   SP P  P + G  S ++P    GA S      S     RS 
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPGGAMSPSYSPTSPAYEPRSP 1605

Query: 772  QXGLCAXPPFNPTGGPYPVISX*IHPVKPXFSPXAXPLVPGXPN 903
                   P ++PT   Y   S    P  P +SP +    P  P+
Sbjct: 1606 GGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPS 1649


>BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.
          Length = 299

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = -3

Query: 699 EKGGQVSGKRQGRNRRAHEGVSRGKTPGIL*SCRVSPXLT*AS 571
           EKG +VSGKR+GRN  A    +   +     +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44


>BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.
          Length = 293

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = -3

Query: 699 EKGGQVSGKRQGRNRRAHEGVSRGKTPGIL*SCRVSPXLT*AS 571
           EKG +VSGKR+GRN  A    +   +     +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44


>AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.
          Length = 482

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = -3

Query: 699 EKGGQVSGKRQGRNRRAHEGVSRGKTPGIL*SCRVSPXLT*AS 571
           EKG +VSGKR+GRN  A    +   +     +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,197,343
Number of Sequences: 237096
Number of extensions: 2393203
Number of successful extensions: 6329
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6321
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11825849886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)