Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_C20
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...   247   1e-66
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces...    30   0.53 
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    26   8.6  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score =  247 bits (605), Expect = 1e-66
 Identities = 120/199 (60%), Positives = 145/199 (72%), Gaps = 2/199 (1%)
 Frame = +2

Query: 161 GAAVGLPLTDEEAAVCMVAG--ELSXXXXXXXXXXXXXXMSSFGDFVALSDPCDVSTATI 334
           GAAVGLPL+D E  V  V+   E +              MSSFGDF+ALSD  DV TA I
Sbjct: 265 GAAVGLPLSDVEKKVYFVSDITEFTPLACAYARARGADRMSSFGDFIALSDTVDVCTARI 324

Query: 335 ISREVSDGVIAPGYSPEALKLLSKKKGGNYCVLKIDPTYEPNLMEQKTIFGLTLEQKRND 514
           ISREVSDGVIAPGY PEAL+LL KKKGG YCVL++DP Y P  +E + ++G++L+Q RN 
Sbjct: 325 ISREVSDGVIAPGYEPEALELLKKKKGGKYCVLQMDPKYVPAEIETRQVYGISLQQHRNH 384

Query: 515 AKITAELFKNVVTTKKDLPSNAVRDLIVATIALKYTQSNSVCFARDGQVIGIGAGQQSRI 694
           AKI   LF+ VV+  KDLP +A+ DL++AT ALKYTQSNSVC+A++G V+G+GAGQQSRI
Sbjct: 385 AKIDFSLFEKVVSKNKDLPKSALIDLVIATTALKYTQSNSVCYAKNGMVVGLGAGQQSRI 444

Query: 695 HCTRLAGGKAALWWLXRHP 751
           HC RLAG KA  WWL  HP
Sbjct: 445 HCNRLAGDKADNWWLRHHP 463



 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = +1

Query: 85  WQLVKELKEALNLPAAASFKHVSP 156
           W LVKEL+E + +PAAASFKHVSP
Sbjct: 240 WPLVKELRENIGIPAAASFKHVSP 263


>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 183

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +2

Query: 473 KTIFGLTLEQKRNDAKITAELFKNVVTTKKDLPSNAVRDLIVATIALKYTQSNS 634
           KT   LT ++   D +I  +L  N +  +  LPS  +RD IV     K + SNS
Sbjct: 32  KTGSALTSDKSLFDKRIVKQLKNNELFNRLTLPSQELRDGIVRENQTKPSNSNS 85


>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 180 GKPTAAPVRGHVLEASRSR 124
           GKPT+APV G  LE S  R
Sbjct: 260 GKPTSAPVFGKKLEISLQR 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,763
Number of Sequences: 5004
Number of extensions: 49399
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)