Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_C20
(914 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 52 6e-07
02_04_0270 - 21439788-21441680 32 0.55
04_01_0182 - 2058396-2058456,2058623-2058660,2058748-2058850,205... 30 2.9
07_01_0137 + 1005818-1006852,1007645-1007827,1008398-1008616,100... 29 3.9
01_05_0106 + 18160018-18160243,18160423-18160470,18160816-181609... 29 6.8
03_03_0097 + 14386262-14386532,14387696-14387919,14388057-143883... 28 9.0
03_02_0394 - 8081172-8081330,8082015-8082134,8082223-8082271,808... 28 9.0
01_06_1045 - 34086936-34087029,34087093-34087406 28 9.0
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 52.0 bits (119), Expect = 6e-07
Identities = 42/161 (26%), Positives = 82/161 (50%), Gaps = 10/161 (6%)
Frame = +2
Query: 272 MSSFGDFVALSDPCDVSTATIIS--REVSDG--------VIAPGYSPEALKLLSKKKGGN 421
+S+FG VA + D A I R +DG V+APGY+ + L++L K K
Sbjct: 356 VSAFGGIVAFNTTIDEDLAKEIREFRSPTDGQTRMFYEIVVAPGYTEKGLEIL-KGKSKT 414
Query: 422 YCVLKIDPTYEPNLMEQKTIFGLTLEQKRNDAKITAELFKNVVTTKKDLPSNAVRDLIVA 601
+L+ + + ++ + + G L Q+ +D +T E +++ + + D A
Sbjct: 415 LRILEAKRSGK-GMLSLRQVSGGWLAQESDD--LTPEDITFTTVSERAPQDSELSDAKFA 471
Query: 602 TIALKYTQSNSVCFARDGQVIGIGAGQQSRIHCTRLAGGKA 724
+ +K+ +SN++ A++ ++G+G+GQ +R+ R+A KA
Sbjct: 472 WLCVKHVKSNAIVIAKNNCMLGMGSGQPNRLESLRIAFRKA 512
>02_04_0270 - 21439788-21441680
Length = 630
Score = 32.3 bits (70), Expect = 0.55
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -3
Query: 183 SGKPTAAPVRGHVLEASRSRKVQRFLQLLDELPWRSARRTGSNN 52
+G+ T +RG E R R V RF L+E W+ R++G+ N
Sbjct: 466 NGERTRRYMRGSDGEGRRDRFVNRFASDLEEPEWKPRRKSGAGN 509
>04_01_0182 -
2058396-2058456,2058623-2058660,2058748-2058850,
2059485-2059567,2059651-2059944,2060440-2060572,
2060660-2060735,2060867-2060997,2061112-2061214,
2061305-2061578,2061661-2061732
Length = 455
Score = 29.9 bits (64), Expect = 2.9
Identities = 20/75 (26%), Positives = 35/75 (46%)
Frame = +2
Query: 515 AKITAELFKNVVTTKKDLPSNAVRDLIVATIALKYTQSNSVCFARDGQVIGIGAGQQSRI 694
A T++ K V+ + DL + V+ ++ AL + +D V+GI G +
Sbjct: 133 ASKTSDTPKRVIALR-DLANCEVKLVLWGEHALDFDADAVHSVGQDNVVVGIFVGTLMKA 191
Query: 695 HCTRLAGGKAALWWL 739
+ L+GG A W+L
Sbjct: 192 YNKTLSGGSACKWYL 206
>07_01_0137 +
1005818-1006852,1007645-1007827,1008398-1008616,
1008682-1008690
Length = 481
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -2
Query: 481 DGLLLHEIRFVSGINL*NTVVPALFLAE*FECFGRVSRRDDAVGHL 344
D LL ++R V G+ N V PAL + F CF R V +
Sbjct: 228 DSLLQLDLRSVRGLKQLNVVAPALQVLSVFFCFADTQARSQPVADI 273
>01_05_0106 + 18160018-18160243,18160423-18160470,18160816-18160974,
18162056-18162219,18162778-18162885,18163695-18163865,
18163945-18164478,18164574-18164648,18164724-18164852,
18164975-18165049,18165129-18165338,18165529-18165681,
18165763-18165986,18166305-18166422,18166518-18166656,
18166745-18166946,18166981-18167149,18167190-18167267,
18167268-18167408,18167717-18167819,18169024-18169324,
18169450-18169518,18169602-18169626,18170946-18170975
Length = 1216
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +2
Query: 485 GLTLEQKRNDAKITAELFKNVVTTKKDLPSNAVRDLIVATI 607
G +E++R A + E + V T DLP+ +VRDL++ +I
Sbjct: 1052 GNDIERRREIANVFCEALRAVDAT--DLPATSVRDLLLPSI 1090
>03_03_0097 +
14386262-14386532,14387696-14387919,14388057-14388307,
14388393-14388771,14388958-14389389
Length = 518
Score = 28.3 bits (60), Expect = 9.0
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = -2
Query: 766 SWRARWVSXQPPQRGLAPRQPRAVDARLLPRTDADHLSITGEADRVTLSVF*SNRRHDEV 587
+WRAR V+ + +G+ R PR + EAD V + V + V
Sbjct: 23 AWRARAVARRLAAQGV--RGPRRGGLLRGCNDEVRRRKAEAEADGVAMDVGDHDYLRRVV 80
Query: 586 PHGVRWQILFG 554
PH V W+ L+G
Sbjct: 81 PHFVAWKELYG 91
>03_02_0394 -
8081172-8081330,8082015-8082134,8082223-8082271,
8083193-8083371,8083583-8083852,8084480-8084631,
8085694-8085715,8086314-8086430
Length = 355
Score = 28.3 bits (60), Expect = 9.0
Identities = 30/103 (29%), Positives = 45/103 (43%)
Frame = +2
Query: 287 DFVALSDPCDVSTATIISREVSDGVIAPGYSPEALKLLSKKKGGNYCVLKIDPTYEPNLM 466
D + DP D T I + V+ A YS + L Y V K + +EP
Sbjct: 191 DLKTVEDPFDSPTYNIPEKPVTFAEGA-SYSLVIVAGLGIAAVAGYAVFK-ELIFEPK-- 246
Query: 467 EQKTIFGLTLEQKRNDAKITAELFKNVVTTKKDLPSNAVRDLI 595
E K IFG L + +ND+++TA++ V + + A R I
Sbjct: 247 EYK-IFGKALARVQNDSQVTAKIGYPVTGYGNESRNRAARQRI 288
>01_06_1045 - 34086936-34087029,34087093-34087406
Length = 135
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 720 LPPASRVQWMRDCCPAPMPITCPSRAKQTELL*VYFRAIVATMRS 586
+PP + + R CCP P+P CPS A + VY + T R+
Sbjct: 1 MPP---IPYGRRCCPPPLP--CPSPATAAVAVLVYKGQLQGTNRA 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,135,843
Number of Sequences: 37544
Number of extensions: 408302
Number of successful extensions: 1075
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -