Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_C19
         (952 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.19 

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 0.19
 Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = -3

Query: 947 PPPGXPGXXPXX-ENPXGXA*GRGPXPPXGXPXGGGXG 837
           P  G PG  P   ++P     G  P P  G P GG  G
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPG 53



 Score = 26.2 bits (55), Expect = 0.44
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 950 GPPPGXPGXXPXXENP 903
           GPPPG P   P  +NP
Sbjct: 45  GPPPGGPPGAPPSQNP 60



 Score = 24.2 bits (50), Expect = 1.8
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -2

Query: 420 PXPXPPPXRSPKXXHXXRGPXPRXPXPXG 334
           P P P P +SP+       P P    P G
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPG 49



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = -1

Query: 478 PQXXPPXPXXXPRDPXPPLPXXXXPPXXQP 389
           PQ  P      P+   PP P    PP   P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,790
Number of Sequences: 438
Number of extensions: 3071
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31202262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)