Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_C17
(923 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 37 0.005
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 31 0.30
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 28 1.6
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 28 1.6
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe... 27 2.8
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 27 3.7
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 3.7
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 27 3.7
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 27 3.7
SPBC577.03c |||GCN5-related N-acetyltransferase |Schizosaccharom... 27 4.9
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 26 6.5
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po... 26 6.5
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 36.7 bits (81), Expect = 0.005
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +1
Query: 376 CEICTKPLNEGECIRL--TCYHVFHWSCAESKYRALPRTTAPAGYQCPSC 519
C +CT +N I TCYHVFH SC + ++CP C
Sbjct: 197 CSVCTDTINPSTSIWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCPYC 246
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 30.7 bits (66), Expect = 0.30
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 376 CEICTKPLNEGE-CIRLTCYHVFHWSCAESKYRALPRTTAPAGYQCPSCATLVFPP 540
C IC + +G+ + L C H FH C + + + CP+C T V PP
Sbjct: 321 CVICLESFTKGDKVVALPCKHEFHRPC-------IAKWIVDYRHACPTCNTEVPPP 369
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +1
Query: 367 NPICEICTKPLNEGECIRLTCYHVFHWSCAESK 465
N C C +PL + C H FH SC K
Sbjct: 834 NESCWHCNQPLFSEPFVLFPCQHAFHRSCMLEK 866
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 279 SECLRKLYGYKSSKVYNSVISSMAARQ*LQSHM*DLYKTIK 401
S+ L K+ G+K+S V+ IS+++ +Q DLYK K
Sbjct: 343 SDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYK 383
>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 182
Score = 27.5 bits (58), Expect = 2.8
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = -2
Query: 832 LLKYFRTYWQVRQAFVLWNVVXQ*QTCYLIHHHLLQ 725
+L Y YW ++ F++W + + +I+ HL++
Sbjct: 107 ILYYVPVYWLLKAIFLIWLALPKFNGATIIYRHLIR 142
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 27.1 bits (57), Expect = 3.7
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +1
Query: 703 LDHRGTPVGASDDESNSRSATXTPHSIVQ---MPDEPANMYENTSIKRTDXFK 852
LDH +PV A D + R+ H +V+ + E +Y + TD FK
Sbjct: 548 LDHILSPVTAEDVPFHVRNTLDEEHRVVERKLLEREEQQIYRRVRVLTTDGFK 600
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.1 bits (57), Expect = 3.7
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +1
Query: 631 SEDQDLKGAASRRSQSPLDTAYYSLDHRGTPVGASDDESNSRSATXTPHSI-VQMPDEPA 807
SED ++ S+S + + + + +S ++ NS + T T + Q
Sbjct: 279 SEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNST 338
Query: 808 NMYENTSIKRTDXFKV 855
+ E+TS+K D K+
Sbjct: 339 SSEESTSVKDEDSSKI 354
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 373 ICEICTKPLNEGECIRLTCYHVFHWSCAESKYRALP 480
+C IC K I TC H F CA ++YR P
Sbjct: 253 VCLICKKDYRSP--IATTCGHHFCEQCAITRYRKTP 286
>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 475
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 481 RTTAPAGYQCPSCATLVFPPPNLVSPVADVLKEK 582
+ TAPA +C LV PP +L +PV++++K K
Sbjct: 101 KETAPAS-ECTRIFYLVLPP-HLFAPVSELIKSK 132
>SPBC577.03c |||GCN5-related N-acetyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = +1
Query: 289 CENCMVTNHPKCIIQSYLQWLQDSDYNPICEICTKPLNEGECIRLTCYHVFHWSCAESK 465
C N ++ + KC + Y W+++ + + C++PL E ++ WS E K
Sbjct: 11 CGNLILVPYQKCHVLKYHNWMKNEELQEL--TCSEPLTLDEEYQMQA----SWSTDEDK 63
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 26.2 bits (55), Expect = 6.5
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +1
Query: 277 RVNVCE-NCMVTNHPKCIIQ 333
+VNVC NCM N PK I +
Sbjct: 222 KVNVCYINCMTINEPKAIFE 241
>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 6.5
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 818 SYILAGSSGICTMECGVXVADLLFDSSSLAP 726
SYILA SS E V ++D FD+ S P
Sbjct: 119 SYILANSSSRTESEPNVQISDTDFDNISTEP 149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,701,824
Number of Sequences: 5004
Number of extensions: 79496
Number of successful extensions: 207
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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