Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_C15
         (1014 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.79 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.79 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   7.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.7  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.79
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 577 PPPPPPXXXXKXXPPPP 527
           PPPPPP       PPPP
Sbjct: 11  PPPPPPGFEPPSQPPPP 27



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 577 PPPPPPXXXXKXXPPPP 527
           PPPPPP        PPP
Sbjct: 10  PPPPPPPGFEPPSQPPP 26



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 577 PPPPPPXXXXKXXPPPP 527
           PPPPP        PPPP
Sbjct: 12  PPPPPGFEPPSQPPPPP 28


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.79
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 577 PPPPPPXXXXKXXPPPP 527
           PPPPPP       PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPP 779



 Score = 29.1 bits (62), Expect = 1.0
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 577 PPPPPPXXXXKXXPPPP 527
           PPPPPP       PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPP 778



 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 577 PPPPPPXXXXKXXPPPP 527
           PPPPPP        PPP
Sbjct: 761 PPPPPPPPGVAGAGPPP 777



 Score = 23.4 bits (48), Expect(2) = 6.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -3

Query: 574 PPPPPXXXXKXXPPPP 527
           PPP P       PPPP
Sbjct: 752 PPPAPIMGGPPPPPPP 767



 Score = 21.0 bits (42), Expect(2) = 6.5
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -3

Query: 412 PXPPPXXKXXGPP 374
           P PPP     GPP
Sbjct: 764 PPPPPGVAGAGPP 776


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 577  PPPPPPXXXXKXXPP 533
            PPPPPP    K  PP
Sbjct: 1882 PPPPPPMALPKAGPP 1896


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -1

Query: 579 PPPPPPXXXXKKXXPPPXFXKKKPP 505
           PPPPPP        P P   +  PP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPP 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,120,411
Number of Sequences: 5004
Number of extensions: 13123
Number of successful extensions: 189
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 527257104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)