Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_C12
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.6  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    24   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   8.7  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -1

Query: 276 VFSAKSI-LKYFSFLITSILMFLQ 208
           VF  KS+ L  FS ++TSIL +LQ
Sbjct: 308 VFYEKSLALAAFSLMLTSILRYLQ 331


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +2

Query: 491 FIDMNKHAQSHYLTGGLHFLFKKNLLLTNSITSG 592
           +++  +  +S Y    +H+  K+N+L T +   G
Sbjct: 275 YVNTEQFVKSQYQANNVHYQGKENILWTQASAKG 308


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 50  LESCGSNQNIKEEKIKTRSEGKMELTE 130
           +ES G+   I++ K+KT       +TE
Sbjct: 583 IESLGNYYKIRDSKVKTLDASHNRITE 609


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 513 ACLFMSIKRNCNVFYFL*IQREHVWFQSDLSDSKS 409
           A +F +I +   V YF        +F SDLS+S++
Sbjct: 285 AFIFATIIQFAVVHYFTKYGSGECYFSSDLSESET 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,104
Number of Sequences: 438
Number of extensions: 4025
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)