Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_C11
(938 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 31 1.7
06_03_0218 + 18219956-18220555 31 1.7
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232 29 7.1
08_01_0156 - 1233431-1233925 29 7.1
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 7.1
01_05_0607 + 23619271-23619426,23619479-23619552,23619917-236205... 29 7.1
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 9.3
10_07_0162 - 13713504-13714754,13716445-13716522 28 9.3
03_06_0149 - 31987183-31987630,31987813-31987874 28 9.3
03_04_0061 - 16949038-16950006 28 9.3
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +2
Query: 395 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 553
CWR + T D Q + +KD P + PSC L+F P P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335
>06_03_0218 + 18219956-18220555
Length = 199
Score = 30.7 bits (66), Expect = 1.7
Identities = 21/62 (33%), Positives = 26/62 (41%)
Frame = -3
Query: 672 GGFVHTAQLGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKRL 493
GG ++ A +T P R R R E G + KR+GR R G RGKR
Sbjct: 82 GGLTEGEEVAARPREKTARPDG--ARARRERRLEAAG--AEKREGRRRGGSSGGLRGKRR 137
Query: 492 VS 487
S
Sbjct: 138 AS 139
>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
Length = 1035
Score = 28.7 bits (61), Expect = 7.1
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +3
Query: 558 PVRLSPFGKRGAF---S*LTL*VSQFGVGRSLQAGLCARTPPFSPTAAPYPVTIVLSP 722
P L P K G F +TL V +GR+ L R+PP P P PV + P
Sbjct: 207 PSSLRPARKDGEFFGEPGMTLRVCSTEMGRTSSLYLDRRSPPLPPRPPPPPVRVASPP 264
>08_01_0156 - 1233431-1233925
Length = 164
Score = 28.7 bits (61), Expect = 7.1
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = -3
Query: 648 LGANDLHRTEIPTA*AMRKRHASRREK--GGQVSGKRQGRNRRAHEGASRGKRLVSL*SC 475
LG D TE+ A A A+R E+ GG G R G RA + +G +
Sbjct: 89 LGDADATATEVDAAAAAEAEAAARGERGDGGGDGGGRAGGRGRARDEREKGAAADRVLGV 148
Query: 474 RVSPPLT 454
R SP ++
Sbjct: 149 RASPTVS 155
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 7.1
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +2
Query: 227 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 382
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>01_05_0607 +
23619271-23619426,23619479-23619552,23619917-23620594,
23620711-23620815,23620877-23621003,23621613-23621773,
23621858-23622028,23622195-23622324,23622532-23622747,
23626821-23627348
Length = 781
Score = 28.7 bits (61), Expect = 7.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 621 QFGVGRSLQAGLCARTPPF 677
+ G +LQAGL +RTPPF
Sbjct: 80 KMSTGENLQAGLLSRTPPF 98
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 9.3
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 176 NESAN---ARGEAVCVLGALPLPRSLTRCAR 259
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>10_07_0162 - 13713504-13714754,13716445-13716522
Length = 442
Score = 28.3 bits (60), Expect = 9.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 623 VRCRSFAPSWAVCTNPPVQPDRCALSGNYRLESNPVRHDLSP 748
V R F P +C P V+P++C G+ R E + + L P
Sbjct: 44 VDARKFVPGAKMCMQPDVKPNKCKSRGS-RKERSRTQAPLLP 84
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 28.3 bits (60), Expect = 9.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 603 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 502
A+ + H R + + +R+GR R AHEG G
Sbjct: 76 AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109
>03_04_0061 - 16949038-16950006
Length = 322
Score = 28.3 bits (60), Expect = 9.3
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 477 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 593
RT+K PG+ ++PRA+ + P Y VR + +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,618,261
Number of Sequences: 37544
Number of extensions: 557843
Number of successful extensions: 1731
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1731
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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