Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_C08
         (921 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0418 - 8291605-8291727,8291834-8291999,8292088-8292191,829...    31   0.97 
06_01_0770 - 5756200-5756741,5756790-5757286,5757356-5757782,575...    30   2.3  
05_05_0138 + 22644263-22644460,22644617-22644711,22645786-226459...    29   5.2  
04_03_0808 - 19872656-19873165,19873251-19873583,19874443-198745...    29   5.2  
11_04_0425 - 17522818-17522822,17522860-17522971,17523267-17523584     29   6.9  

>03_02_0418 -
           8291605-8291727,8291834-8291999,8292088-8292191,
           8292280-8292456
          Length = 189

 Score = 31.5 bits (68), Expect = 0.97
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +3

Query: 675 AAGKTPRLKRQRVATPHVKKLLSLMR-QKVVEEYEETLDDGNV 800
           AA + PRL R+ +AT  V++LL+L    + +   E+ + +GN+
Sbjct: 27  AAVRRPRLARKSIATDDVRQLLTLGHLDRAIHRAEQVIGEGNM 69


>06_01_0770 -
           5756200-5756741,5756790-5757286,5757356-5757782,
           5757854-5757911
          Length = 507

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +3

Query: 636 DNLPEGIGTPH-LEAAGKTPRLKRQRVATPHVKKLLSLMRQKVVEEYEETLDDGNVDGSP 812
           D++ E I   H  +   +   + R RVA  H KK LS  +Q+ + + +  LDDG V  + 
Sbjct: 337 DHMVEHIKEQHGRDVRQEEKAMVRLRVACEHAKKALS-EQQETLVQMDSLLDDGAVFSAT 395

Query: 813 VTK 821
           +T+
Sbjct: 396 LTR 398


>05_05_0138 +
           22644263-22644460,22644617-22644711,22645786-22645949,
           22646725-22646970,22647600-22647944,22648516-22648586,
           22648676-22648794,22650508-22650637,22650806-22650857,
           22650974-22651136,22651244-22651418,22651772-22651942,
           22652275-22652388,22652559-22652609
          Length = 697

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 15/45 (33%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
 Frame = +2

Query: 413 RMEDLINVEECTSISELIKENEIK-AKEINVDVKFDSLYEKILDE 544
           ++E L+ + E  +  +L +E  ++ AKE+ +D+  +SLY+K +DE
Sbjct: 560 QLESLVRLAEARARVDLREEVTLEDAKEV-IDIMTESLYDKCVDE 603


>04_03_0808 -
           19872656-19873165,19873251-19873583,19874443-19874543,
           19874628-19874853,19874941-19875079,19875339-19875451,
           19875628-19875911,19876287-19876326
          Length = 581

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 11/47 (23%), Positives = 28/47 (59%)
 Frame = -3

Query: 337 SKFVGCRDSWSLCRSGSRKSSRARTFRVSGGSRHSRKQVDRSHSKPS 197
           +++ G   +W     G+R++ R R   ++GG+  ++++ +++ S PS
Sbjct: 49  ARYQGDAAAWPRRLGGARRARRLRELGLAGGASWAKRRHEKASSSPS 95


>11_04_0425 - 17522818-17522822,17522860-17522971,17523267-17523584
          Length = 144

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 633 DDNLPEGIGTPHLEAAGKTPRLKRQRVATPHVKK 734
           +D  P   G P  +AA ++PR  R+RV  PH+++
Sbjct: 69  EDRRPVHAGAPEADAARRSPR--RRRVHEPHLRQ 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,160,067
Number of Sequences: 37544
Number of extensions: 363975
Number of successful extensions: 1098
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)