Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_C06
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   2.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.4  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -3

Query: 539 PXKXPPXPXGGGXFFXXKKXPPPPPXXXKKK 447
           P   PP P   G     +  PPPPP   KK+
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.0 bits (47), Expect(2) = 2.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 481 PPPPPPXG 458
           PPPPPP G
Sbjct: 762 PPPPPPPG 769



 Score = 22.6 bits (46), Expect(2) = 2.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 487 KXPPPPPP 464
           K PPPPPP
Sbjct: 730 KSPPPPPP 737


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -3

Query: 611 GGXXXPPPPXPXGGXFFXGGGXXGPXKXPPXPXGGG 504
           GG    PPP P G   F G G  G         GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,408,331
Number of Sequences: 5004
Number of extensions: 18662
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)