Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_C04
(902 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0218 + 18219956-18220555 33 0.31
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 31 1.7
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365... 29 3.8
12_01_0816 + 7502669-7503145 29 5.1
08_02_0291 - 15416920-15417246 29 6.7
08_01_0156 - 1233431-1233925 29 6.7
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.8
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254 28 8.8
07_01_1035 + 8998266-8998349,8999394-8999441,8999714-8999792,899... 28 8.8
03_06_0149 - 31987183-31987630,31987813-31987874 28 8.8
03_04_0061 - 16949038-16950006 28 8.8
>06_03_0218 + 18219956-18220555
Length = 199
Score = 33.1 bits (72), Expect = 0.31
Identities = 22/63 (34%), Positives = 27/63 (42%)
Frame = -3
Query: 555 NGGFVHTAQLGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKR 376
NGG ++ A +T P R R R E G + KR+GR R G RGKR
Sbjct: 81 NGGLTEGEEVAARPREKTARPDG--ARARRERRLEAAG--AEKREGRRRGGSSGGLRGKR 136
Query: 375 LVS 367
S
Sbjct: 137 RAS 139
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +2
Query: 275 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 433
CWR + T D Q + +KD P + PSC L+F P P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335
>05_01_0462 -
3658153-3658290,3658394-3658540,3658622-3658720,
3658802-3659253,3659597-3660280,3662072-3662180
Length = 542
Score = 29.5 bits (63), Expect = 3.8
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
Frame = +1
Query: 385 PGSSLVRSPVPTLPLTGYLSAFLPSGSVALS-HSSRCR-YLSSV*VVRSKLGCVHEPPVQ 558
P S+ + +PVPTLP++ + F G S H + R Y S G V P
Sbjct: 282 PQSTNISAPVPTLPISCDSAPFAHGGYAPRSAHRNNLRTYPPPAFASSSNPGAVSHEPAI 341
Query: 559 PDRCALSGNYRLESNPVRHDLSPLAAATGNRISRARYV 672
P + +Y ++ + P A + R+V
Sbjct: 342 PSYPPAAPSYPPATSAASSSVQPFHAEAAAHLRHPRHV 379
>12_01_0816 + 7502669-7503145
Length = 158
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 574 RRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERR 443
R SG +R V PAW ER + ++ +V E+A ERR
Sbjct: 8 RSSGEGDRPVARWWPAWQEREKESLESSAVEGERATAEVGSERR 51
>08_02_0291 - 15416920-15417246
Length = 108
Score = 28.7 bits (61), Expect = 6.7
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -1
Query: 860 GVICCLE--TKKTPAIPXVVCLPDQXVPTXFPKVTGFSRAQIP 738
G++CCLE TKK IP +V +P P TG SRA +P
Sbjct: 28 GLVCCLETTTKKKTQIPSLV-MPPYCSP------TGSSRAHLP 63
>08_01_0156 - 1233431-1233925
Length = 164
Score = 28.7 bits (61), Expect = 6.7
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = -3
Query: 528 LGANDLHRTEIPTA*AMRKRHASRREK--GGQVSGKRQGRNRRAHEGASRGKRLVSL*SC 355
LG D TE+ A A A+R E+ GG G R G RA + +G +
Sbjct: 89 LGDADATATEVDAAAAAEAEAAARGERGDGGGDGGGRAGGRGRARDEREKGAAADRVLGV 148
Query: 354 RVSPPLT 334
R SP ++
Sbjct: 149 RASPTVS 155
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 55 NESAN---ARGEAVCVLGALPLPRSLTRCAR 138
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
Length = 425
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3
Query: 729 SSSSVAVVRPPLQELCSTAYIPRSANPVTS 640
+SSSVA PP + L ST +PR NP+ +
Sbjct: 244 ASSSVAAASPPPRNLVSTTPVPR--NPIAA 271
>07_01_1035 +
8998266-8998349,8999394-8999441,8999714-8999792,
8999874-8999978,9000219-9000328,9000510-9000691,
9000909-9000978,9001066-9001239,9001373-9001477,
9001684-9001815,9002062-9002157,9002273-9002572
Length = 494
Score = 28.3 bits (60), Expect = 8.8
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -3
Query: 732 CSSSSVAVVRPPLQELCSTAYIPRSANPVTSG 637
C +++V+PP+ E+ +IPR + P +G
Sbjct: 160 CFFVEMSIVKPPVNEVLQGLFIPRLSGPGATG 191
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 483 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 382
A+ + H R + + +R+GR R AHEG G
Sbjct: 76 AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109
>03_04_0061 - 16949038-16950006
Length = 322
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 357 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 473
RT+K PG+ ++PRA+ + P Y VR + +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,650,823
Number of Sequences: 37544
Number of extensions: 610033
Number of successful extensions: 2002
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2002
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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