Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_C03
         (1002 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.61 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.61
 Identities = 12/33 (36%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
 Frame = +2

Query: 716 PPPRXXXXPXPP--GXXXXPXRXPPPXAPPXXP 808
           P P     P  P  G    P + PPP  PP  P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 24.6 bits (51), Expect = 1.4
 Identities = 14/45 (31%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
 Frame = +1

Query: 691 PXXXAXXPPPPPXXXXXXPPRGXXXXXAXPPPP--XPXXXPXXXP 819
           P   A  P P P      P RG     +  PPP   P   P   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect = 4.3
 Identities = 13/42 (30%), Positives = 13/42 (30%), Gaps = 2/42 (4%)
 Frame = +3

Query: 681 GPPPPXXGXXPPPPPGXXGXPPPPGXXXXXXGAP--PPXPXP 800
           G P P       P     G PP P       G P  PP   P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 7.6
 Identities = 13/42 (30%), Positives = 13/42 (30%)
 Frame = +3

Query: 474 PPXXGPGXLXPLRXXRXPXPAXGVXPXGGGGXPPXPPXGGXP 599
           P    PG   P        P  G  P    G PP  P G  P
Sbjct: 16  PSSGAPGP-QPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 10.0
 Identities = 12/45 (26%), Positives = 12/45 (26%)
 Frame = +3

Query: 690 PPXXGXXPPPPPGXXGXPPPPGXXXXXXGAPPPXPXPXAXXXXXP 824
           P      P P P      P  G        PPP   P A     P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 21.8 bits (44), Expect = 10.0
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = -3

Query: 616 PXARXXGXPPXGGXGGXPPPPXGXTP 539
           P A   G PP    G  P  P G  P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 965 PPXPXPPXPP 994
           PP P PP PP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.2 bits (45), Expect = 7.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 958 PPPPXPXPPXP 990
           PP P P PP P
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.310    0.148    0.519 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 260,904
Number of Sequences: 438
Number of extensions: 14198
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33258225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)