Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_C01
(900 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar... 213 2e-56
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 27 2.7
SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.7
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 27 3.6
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 27 3.6
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 26 8.4
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 26 8.4
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 26 8.4
>SPBC800.06 |brx1||ribosome biogenesis protein
Brx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 213 bits (521), Expect = 2e-56
Identities = 105/234 (44%), Positives = 144/234 (61%), Gaps = 6/234 (2%)
Frame = +2
Query: 170 KVKQRITEPVTKDENVPLPPVRMSSDPAPKQVKWINRQRVLVFAMRGINHRHRHLMEDIK 349
K+K P +DE+ PV+ +Q+VLV + RG+ +R RHL+ D+
Sbjct: 6 KLKTSERAPKNEDEDEEYVPVQNGQGNKHSAGFVPIKQKVLVLSSRGVTYRQRHLLNDLV 65
Query: 350 KLMPHHKTESKMERSKNLYVVNEISEMKNCNKCILFEGRKMRDLYMWISNIPNGPSAKFL 529
+MPH K +SK++ LY +NE++E+ NCN FE R+ DLY+ I+ PNGP+ KF
Sbjct: 66 SMMPHSKKDSKLDSKDRLYQLNELAELYNCNNIFFFESRRREDLYLHIARAPNGPTVKFH 125
Query: 530 VENIYTMGELKMTGNCLRGSRPLLSFDPQFTKDPHYCLLKELLVQIFGVPNYHPKSQPFF 709
VEN++TM EL MTGN L+GSRP+LSFD F PH ++KELL Q FG+P +S+PF
Sbjct: 126 VENLHTMDELNMTGNALKGSRPILSFDKTFDTAPHLKVVKELLQQTFGIPKGARRSKPFI 185
Query: 710 DHVYTFMVLDNRIWFRNYQIL-SEDGA-----LAEIXPRFVLNPVKIFSGSFGG 853
D V T + D +IWFRNY+I +ED + L EI PRFV+ + I GSFGG
Sbjct: 186 DRVCTLTIADGKIWFRNYEIRENEDKSKDPVTLIEIGPRFVMTIINILEGSFGG 239
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 449 ILFEGRKMRDLYMWISNIPNGPSAKFLVENIYTMGELKMTG 571
+L E RK + + + ++PNGPS F + N+ T E+ G
Sbjct: 150 VLNEDRKKTNA-LTLVHLPNGPSFYFTLSNLQTAKEISNHG 189
>SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 166
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +2
Query: 677 PNYHPKSQPFFDHVYTFMVLDNRIWFRNYQILSEDGALAEIXPRFVLNPVK 829
P +PK+ + + N+ + Y+IL E+ L I +F P+K
Sbjct: 107 PETNPKTPISLKELKDIEIYQNQFHYSAYEILEEEKILDNIFRKFTALPIK 157
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 236 MSSDPAPKQVKWINRQRVLVFAMRGINHRHRHLMEDIKKLMPHHKTESKMERSKN 400
M + P+P +K N++R L ++ N R +++KK+ ++S + KN
Sbjct: 566 MEATPSPALLKKTNKRRELPSSLTKKNTRTPQRSKEVKKVPARKLSQSTKKSDKN 620
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -1
Query: 870 VFP*CAPPND--PENILTGFNTNRGXISAKAPSSDR 769
V P C P++ E++L F TN+ ISA +SDR
Sbjct: 680 VLPNCHVPSNLSTESLLIKFYTNQNKISADVTASDR 715
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 25.8 bits (54), Expect = 8.4
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Frame = +2
Query: 425 EMKNCNKCILFEGRKMRDLYMWISNIPNGPSAKFLVENIY-TMGELKMTGNCLRGSRPLL 601
++++ K +LFE Y + I + P N+Y EL + N R ++
Sbjct: 224 QIQSLMKSLLFEYHHENVNY--VPTIADAPLTDEQKLNLYLARNELIVLANHFRDTKE-- 279
Query: 602 SFDPQFTKDPHYC-LLKELLVQIFGVPNY 685
DP +P L + L+ FGVPNY
Sbjct: 280 --DPAIVANPFPVRLARPALINAFGVPNY 306
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 566 TGNCLRGSRPLLSFDPQFTKDPHYCLLKE 652
T +CL G L + DPH+CLL+E
Sbjct: 197 TRHCLYGLDADLIMLGLLSHDPHFCLLRE 225
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = -1
Query: 504 GILDIHIYKSLIFLPSNKIHLLQFFISLISLTTYKFLLL 388
GIL +YK + L + ++ L FF S++ + T+ +++
Sbjct: 134 GILPFTMYKYTVILTALEMPLAIFFCSIVCVCTFSPIMI 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,697,259
Number of Sequences: 5004
Number of extensions: 82734
Number of successful extensions: 231
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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