Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_C01
(900 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0434 - 22904790-22904927,22905220-22905318,22905404-229054... 196 2e-50
01_01_0325 + 2631637-2631882,2632715-2632788,2632874-2633006,263... 38 0.008
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879 32 0.54
05_01_0206 + 1487034-1489430 30 2.9
12_02_1278 + 27501180-27501190,27502661-27502675,27503299-275034... 29 6.7
09_04_0226 - 15859439-15860377 29 6.7
08_02_1379 - 26540012-26540587,26540804-26540995,26541777-265418... 29 6.7
01_01_0433 + 3282195-3285185 28 8.8
>02_04_0434 -
22904790-22904927,22905220-22905318,22905404-22905472,
22905582-22905683,22905750-22905824,22906293-22906417,
22906511-22906589,22906933-22907074,22907200-22907441
Length = 356
Score = 196 bits (478), Expect = 2e-50
Identities = 100/232 (43%), Positives = 143/232 (61%), Gaps = 39/232 (16%)
Frame = +2
Query: 275 NRQRVLVFAMRGINHRHRHLMEDIKKLMPHHKTESKMERSKNL-YVVNEISEMKNCNKCI 451
N+++VLV R IN+R+RHLM+++ L+PH K +SK+E ++ +NE+ E++NC+ C+
Sbjct: 66 NKEKVLVTCSRRINYRYRHLMQNVVSLLPHAKKDSKVESKQSKGNALNELLELRNCSSCL 125
Query: 452 LFEGRKMRDLYMWISNIPNGPSAKFLVENIYTMGELKMTGNCLRGSRPLLSFDPQFTKDP 631
FE RK +DLY+W+ P GPS KFLV ++TM ELK+TGN L+GSRPL++F F + P
Sbjct: 126 FFECRKQKDLYLWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPLITFSTNFDEQP 185
Query: 632 HYCLLKELLVQ-------------------------IFGVPNYHPKSQPFFDHVYTFMVL 736
H+ L+KE+L Q IF P H K++PF DHV+ F ++
Sbjct: 186 HWQLVKEMLTQLSHVMNFMENWGNAIRDEVIHASFLIFATPKDHRKAKPFHDHVFVFSIV 245
Query: 737 DNRIWFRNYQI---------LSEDG----ALAEIXPRFVLNPVKIFSGSFGG 853
D+ +WFRNYQI + + G L E+ PRF LNP+KIF GSFGG
Sbjct: 246 DDHVWFRNYQISVPHNEIDKVDKGGLDKMTLVEVGPRFCLNPIKIFGGSFGG 297
>01_01_0325 +
2631637-2631882,2632715-2632788,2632874-2633006,
2633091-2633172,2633471-2633580,2633659-2633751,
2633854-2633904,2634013-2634105,2635257-2636129,
2636204-2636316,2636436-2636448
Length = 626
Score = 38.3 bits (85), Expect = 0.008
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 3/125 (2%)
Frame = +2
Query: 410 VNEISEMKNCNKCILFE---GRKMRDLYMWISNIPNGPSAKFLVENIYTMGELKMTGNCL 580
+N + CN C+ FE G +M +M+ N FL+ + +++
Sbjct: 135 INVFLKWSRCNFCLFFEWAEGDQMMICHMF--NTLKEIHISFLINPAFLDESMEV----- 187
Query: 581 RGSRPLLSFDPQFTKDPHYCLLKELLVQIFGVPNYHPKSQPFFDHVYTFMVLDNRIWFRN 760
+ + PLLSF F +D + L+KE+L+ +F ++ +Y F + ++FR
Sbjct: 188 KVTNPLLSFSSNFVEDETWALVKEMLMMMFSPVQEDERAA---SDLYVFTKSRDSVYFRI 244
Query: 761 YQILS 775
++I S
Sbjct: 245 FKITS 249
>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
Length = 696
Score = 32.3 bits (70), Expect = 0.54
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +2
Query: 299 AMRGINHRH-RHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNKCILFE---GR 466
A R H R ++ED+K + H K + NL +VNE+ E K K +L E R
Sbjct: 262 AWRSREHEKVRAILEDMKADLDHEKKNRRRLEMINLKLVNELKEAKMSAKQLLQEYDNER 321
Query: 467 KMRDLYMWISN 499
K R+L + N
Sbjct: 322 KARELTEEVCN 332
>05_01_0206 + 1487034-1489430
Length = 798
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 218 PLPPVRMSSDPAPKQVKWINRQRVLVFAMRGINHRHRHLMEDI 346
P P S P+P W R ++L+ A RGI++ H + + I
Sbjct: 563 PKPNGSSSPSPSPVATSWKLRIKILLDASRGIDYLHSYAVPPI 605
>12_02_1278 +
27501180-27501190,27502661-27502675,27503299-27503410,
27504340-27504439,27504579-27504641,27505208-27505318,
27505405-27505589,27506002-27506140,27506374-27506491,
27506568-27506669,27506904-27507158,27507315-27507426,
27507588-27507614
Length = 449
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 686 HPKSQPFFDHVYTFMVLDNRIWFRNYQILSEDGALAEIXP 805
HPK PF D ++ F + + Y+++++DGA+ + P
Sbjct: 130 HPKVDPFTDEMFAF-GYSHEPPYCTYRVITKDGAMLDPVP 168
>09_04_0226 - 15859439-15860377
Length = 312
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +2
Query: 665 IFGVPNYHPKSQPFF-DHVYTFMVLDNRIWFRNYQILSEDGALAEIXP 805
++ P HP S F D + + DNR W R Q + AL P
Sbjct: 263 MYNFPGRHPCSHEFIPDTIAVHQLKDNRRWARTLQYFNFTAALKPFYP 310
>08_02_1379 -
26540012-26540587,26540804-26540995,26541777-26541812,
26542255-26542488
Length = 345
Score = 28.7 bits (61), Expect = 6.7
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Frame = +2
Query: 608 DPQFTKDPHYCLLKELLVQIFG---VPNYHPKSQPFFDHVYTFMVLDNRIWFRNYQILSE 778
DP KD + L E + G N P S FD+VY +++ F + Q+L
Sbjct: 236 DPSMNKD-YAAQLMEACPRDVGKTIAVNMDPVSPIVFDNVYYSNLVNGLGLFTSDQVLYT 294
Query: 779 DGALAEIXPRFVLNPVKIF 835
DGA F +N F
Sbjct: 295 DGASRRTVEEFAVNQTAFF 313
>01_01_0433 + 3282195-3285185
Length = 996
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 497 NIPNGPSAKFLVENIYTMGELKMTGNCLRGSRP 595
NI NG L+EN T+ L + GN LRG P
Sbjct: 644 NILNGSIPSCLMENSSTLKILNLRGNELRGELP 676
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,557,223
Number of Sequences: 37544
Number of extensions: 475742
Number of successful extensions: 1149
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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