Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_B22
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    61   2e-10
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    38   0.002
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    37   0.003
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    30   0.39 
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    30   0.52 
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.69 
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    27   3.7  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   8.5  

>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 31/64 (48%), Positives = 41/64 (64%)
 Frame = +1

Query: 655 RHAEINCIDQILEYCRLNNIDYKLYSKNVIVYVTVEPCIMCAAALNNLNIRXVVYGXPND 834
           RHAE+  I++ILE+   +        K   +YVTVEPC+MCAAAL  L+I+ V +G  ND
Sbjct: 243 RHAELIAIEKILEHYPASVF------KETTLYVTVEPCLMCAAALKQLHIKAVYFGCGND 296

Query: 835 RLGG 846
           R GG
Sbjct: 297 RFGG 300


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 10/104 (9%)
 Frame = +1

Query: 565 KEVPVGCVFTV----NGQIIAESKNSVNATHNPTRHAEINCIDQILEY---CRLNNIDY- 720
           K   +GC   +       ++A S +  +   NP  H  +N I+ + +     R N  D  
Sbjct: 176 KHGEIGCAAAIYDPTTDTVLAVSVDERSKLKNPINHCVMNAINLVAKRELSRRQNRTDGS 235

Query: 721 --KLYSKNVIVYVTVEPCIMCAAALNNLNIRXVVYGXPNDRLGG 846
             +   K++ V +T EPC+MC+  L +  IR ++Y       GG
Sbjct: 236 KDRYLCKDLTVVMTHEPCVMCSMGLLHSRIRRLIYCKKQPLTGG 279


>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = +1

Query: 574 PVGCVFT-VNGQIIAESKNSVNATHNPTRHAEINCIDQILEYCRLNNIDYKLYSKNVIVY 750
           P GC+    N  +I  + N V    + T+HAE   +  I +  R    D +       +Y
Sbjct: 31  PFGCIIVDENDNVIMSAGNRV-PDGDVTQHAETRAVGLITKTRR----DLE----KCTLY 81

Query: 751 VTVEPCIMCAAALNNLNIRXVVYGXPNDRL 840
            + EPC MC+ A+    IR +++G  N+ L
Sbjct: 82  TSTEPCAMCSGAIFWSGIRRMIFGLSNENL 111


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 488 YNFKQILDKSAINCFLLNSEVLCRPSYYCLQLLD 387
           + +  +LD+  I  F LNS  + RP+Y+ + L+D
Sbjct: 650 FEWIHMLDRPVIKVFPLNSSEISRPNYHIVPLID 683


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 736 NVIVYVTVEPCIMCAAALNNLNIRXVVY 819
           N I+Y    PC+ C+  +  L I+ VVY
Sbjct: 289 NAILYCDTCPCLTCSVKITQLGIKEVVY 316


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 739 RSWNIACNRCCLIYSILEFDQCS*FPHV 656
           R W IAC   C I  IL +  C+ + HV
Sbjct: 40  RRWKIACTLLCSITVILAYRMCAVYHHV 67


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 379 WHVYYLEITRSQIASIILHPLFLVNNYIQN 290
           WHVY++      I  I+L+  F+++  + N
Sbjct: 888 WHVYWMYFKSCSIGLILLYFFFIISGIMMN 917


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 610  IAESKNSVNATHNPTRHAEINCIDQILEYCRLNNIDYKLYSKNV 741
            IA  +NSV A  N +R    NC + +L Y   N +D      NV
Sbjct: 1580 IALQRNSVYAMFNSSRPGNKNCNEMLLTYLS-NALDENYLHWNV 1622


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,709,047
Number of Sequences: 5004
Number of extensions: 79096
Number of successful extensions: 186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)