Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_B20
(835 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 1.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 1.8
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 30 1.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 1.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 5.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 5.4
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = +1
Query: 493 GXPXXXPPXGGXPXXFFXWGXXXFXXPXXXXXKXXPPPPXGXXXKKXPPPP 645
G P PP GG P P PPPP G PPPP
Sbjct: 740 GGPPPPPPPGGLPP-ISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/73 (30%), Positives = 22/73 (30%)
Frame = +1
Query: 493 GXPXXXPPXGGXPXXFFXWGXXXFXXPXXXXXKXXPPPPXGXXXKKXPPPPXXXXXGXFX 672
G P PP GG P G P PPP PPPP G F
Sbjct: 724 GGPPPPPPPGGLPP--ITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFK 781
Query: 673 XXKKKIXFXPPPP 711
PPPP
Sbjct: 782 GGPP----PPPPP 790
Score = 28.7 bits (61), Expect = 5.4
Identities = 27/95 (28%), Positives = 27/95 (28%)
Frame = +2
Query: 383 PXXCFGKKXPPFFXXXKXXPXPPXXFWXRGGFXXKPGGXXXFXPXGGGXPXXFFXGXXXX 562
P G PP P PP GG GG P GG P G
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPP---PGGLPPITGGPPPPPPPGGLPP---ISGGPPP 760
Query: 563 XXXXXXXXXXXXPPPPXXGXKKKXXPPPXXXXGGF 667
PPPP G K PPP G F
Sbjct: 761 PPPPPGGCPPPPPPPPPGGFK--GGPPPPPPPGMF 793
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = +1
Query: 493 GXPXXXPPXGGXPXXFFXWGXXXFXXPXXXXXKXXPPPPXGXXXKKXPPPP 645
G P PP GG P P PPPP G PPPP
Sbjct: 740 GGPPPPPPPGGLPP-ISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/73 (30%), Positives = 22/73 (30%)
Frame = +1
Query: 493 GXPXXXPPXGGXPXXFFXWGXXXFXXPXXXXXKXXPPPPXGXXXKKXPPPPXXXXXGXFX 672
G P PP GG P G P PPP PPPP G F
Sbjct: 724 GGPPPPPPPGGLPP--ITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFK 781
Query: 673 XXKKKIXFXPPPP 711
PPPP
Sbjct: 782 GGPP----PPPPP 790
Score = 28.7 bits (61), Expect = 5.4
Identities = 27/95 (28%), Positives = 27/95 (28%)
Frame = +2
Query: 383 PXXCFGKKXPPFFXXXKXXPXPPXXFWXRGGFXXKPGGXXXFXPXGGGXPXXFFXGXXXX 562
P G PP P PP GG GG P GG P G
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPP---PGGLPPITGGPPPPPPPGGLPP---ISGGPPP 760
Query: 563 XXXXXXXXXXXXPPPPXXGXKKKXXPPPXXXXGGF 667
PPPP G K PPP G F
Sbjct: 761 PPPPPGGCPPPPPPPPPGGFK--GGPPPPPPPGMF 793
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/66 (27%), Positives = 19/66 (28%)
Frame = +1
Query: 472 GXXXKTXGXPXXXPPXGGXPXXFFXWGXXXFXXPXXXXXKXXPPPPXGXXXKKXPPPPXX 651
G + G P PP GG P F PPPP PPP
Sbjct: 325 GAPQQGFGAPPQGPPQGGPPQGSFGAPPPQQFHAPSPQSFGGPPPPVSSAPGNFAPPPQS 384
Query: 652 XXXGXF 669
G F
Sbjct: 385 GPPGAF 390
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = +1
Query: 493 GXPXXXPPXGGXPXXFFXWGXXXFXXPXXXXXKXXPPPPXGXXXKKXPPPP 645
G P PP GG P P PPPP G PPPP
Sbjct: 323 GGPPPPPPPGGLPP-ISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 372
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/73 (30%), Positives = 22/73 (30%)
Frame = +1
Query: 493 GXPXXXPPXGGXPXXFFXWGXXXFXXPXXXXXKXXPPPPXGXXXKKXPPPPXXXXXGXFX 672
G P PP GG P G P PPP PPPP G F
Sbjct: 307 GGPPPPPPPGGLPP--ITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFK 364
Query: 673 XXKKKIXFXPPPP 711
PPPP
Sbjct: 365 GGPP----PPPPP 373
Score = 28.7 bits (61), Expect = 5.4
Identities = 27/95 (28%), Positives = 27/95 (28%)
Frame = +2
Query: 383 PXXCFGKKXPPFFXXXKXXPXPPXXFWXRGGFXXKPGGXXXFXPXGGGXPXXFFXGXXXX 562
P G PP P PP GG GG P GG P G
Sbjct: 290 PPITGGPPPPPGLPPITGGPPPPPP---PGGLPPITGGPPPPPPPGGLPP---ISGGPPP 343
Query: 563 XXXXXXXXXXXXPPPPXXGXKKKXXPPPXXXXGGF 667
PPPP G K PPP G F
Sbjct: 344 PPPPPGGCPPPPPPPPPGGFK--GGPPPPPPPGMF 376
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -1
Query: 526 PPPXGGKXXGPPXFXXKXPPXPKXXXG 446
PPP G+ GPP PP P G
Sbjct: 300 PPPPPGRTPGPPGMPGMPPPPPPSRFG 326
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -1
Query: 526 PPPXGGKXXGPPXFXXKXPPXPKXXXG 446
PPP G+ GPP PP P G
Sbjct: 310 PPPPPGRTPGPPGMPGMPPPPPPSRFG 336
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,360,644
Number of Sequences: 27780
Number of extensions: 266781
Number of successful extensions: 781
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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