Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_B14
(945 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 33 0.044
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 29 0.72
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p... 29 0.95
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 29 0.95
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 28 2.2
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 27 2.9
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom... 27 3.8
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 26 6.7
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 26 6.7
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 26 6.7
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 26 8.9
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 33.5 bits (73), Expect = 0.044
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 235 LMKNLKGHPGTVLLMDFSANGKFMAATCDET 327
L K L GH G V +D+SA+G+F+ + D+T
Sbjct: 37 LQKELTGHTGCVNTLDWSADGEFLLSGSDDT 67
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 29.5 bits (63), Expect = 0.72
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 602 NLFPGPKGDSGRGSLGSTPRSDSDEEADAVEHLCVRCDKMFRMTRD 739
++F +G + RG L R + A+A+EH CVRC + MT+D
Sbjct: 342 SIFAWTRGLAHRGRLDGNERLV--KFANALEHACVRCVEKGIMTKD 385
>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 29.1 bits (62), Expect = 0.95
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +3
Query: 174 RR*KQKTPSMERKNGLQPSLAYEESQGSSR 263
RR K+KTP MER L L YE S S R
Sbjct: 96 RRIKKKTPKMERGIKLHQILEYETSPPSER 125
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 29.1 bits (62), Expect = 0.95
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 256 HPGTVLLMDFSANGKFMAATCDETVASVD 342
HP V + FS NGK++A C++ D
Sbjct: 312 HPSVVCCVKFSNNGKYLATGCNQAANVFD 340
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 256 HPGTVLLMDFSANGKFMAATCDETVASV 339
H GTV + FS NG+++A+ D+ V +
Sbjct: 73 HTGTVTSVRFSPNGQYLASGSDDRVVII 100
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -3
Query: 169 VSPQRLHTAVHQ*ECQNCSLSHVPPPLGF 83
+ P ++HT + Q QNCSL HVP L F
Sbjct: 183 IRPSKVHTEI-QWCLQNCSLIHVPFELLF 210
>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +1
Query: 430 LSTEQLAQALRSHFLSPKRMWTLGYPLEIEPNSTKAVVYINPPPRPRPMTTW 585
LS + + Q + PK + G L++ P + + P P+P+P T W
Sbjct: 43 LSRDNVQQLVNKMISLPKERTSDGVLLQL-PETVTPLPRAKPLPKPKPETKW 93
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 603 FRGIYIPRSHRSRSRRWIYVY 541
F +Y+PRSHR S R Y Y
Sbjct: 353 FSRLYVPRSHRRSSDRSHYSY 373
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 211 KTDFSHPWL-MKNLKGHPGTVLLMDFSANGKFMAA 312
K D P L L H G VL +++S NG F+A+
Sbjct: 204 KWDIRFPKLPFLKLAAHNGVVLCVNYSPNGVFLAS 238
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 603 FRGIYIPRSHRSRSRRWIYVY 541
F +Y+PRSHR S R Y Y
Sbjct: 353 FSRLYVPRSHRRSSDRSHYSY 373
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 649 PQGPATAVTLGTREQIQGHL 590
P+ P TA TL T +Q GH+
Sbjct: 456 PKMPVTATTLSTLQQFVGHI 475
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,468,458
Number of Sequences: 5004
Number of extensions: 72201
Number of successful extensions: 227
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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