Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_B12
         (994 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    28   0.11 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.61 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.2  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   9.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 28.3 bits (60), Expect = 0.11
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 751  PPPPPPPPXXG 719
            PPPPPPPP  G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 26.6 bits (56), Expect = 0.35
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 752  PPPPPPPP 729
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 794  PPPPPPXP 771
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 793  PPPPPPXP 770
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.61
 Identities = 14/41 (34%), Positives = 14/41 (34%)
 Frame = -3

Query: 797 GPPPPPPXPXXXXXXPPPPPPPPPXXXXXXPPPXXXXXPPP 675
           G P P P P      P    PP P      PPP      PP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNP---SQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 5.7
 Identities = 10/33 (30%), Positives = 10/33 (30%)
 Frame = -3

Query: 773 PXXXXXXPPPPPPPPPXXXXXXPPPXXXXXPPP 675
           P      P P P   P       PP     PPP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 22.6 bits (46), Expect = 5.7
 Identities = 10/33 (30%), Positives = 11/33 (33%)
 Frame = -1

Query: 730 PXXGXXXPPPPXXFXPPPPXKKKKXXXGGGPPP 632
           P  G   P P     P  P +        GPPP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPP 48


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 13/32 (40%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
 Frame = +3

Query: 705 GGXXXPXXGG--GGGGGGXXXXXXGXGGGGGG 794
           GG      GG   G  GG        GGGGGG
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGG 51



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 681 GGXXXXGGGGXXXPXXGGGGGGGG 752
           GG      GG        GGGGGG
Sbjct: 28  GGVVTGASGGSIVVGANNGGGGGG 51



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +1

Query: 676 GGGXXXXXGGGXXXXXXGGGGGGGGG 753
           GG      GG        GGGGGG G
Sbjct: 28  GGVVTGASGGSIVVGANNGGGGGGLG 53


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -3

Query: 752 PPPPPPPPPXXXXXXP 705
           PP P PPPP      P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 752  PPPPPPPP 729
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 751  PPPPPPPP 728
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 22.2 bits (45), Expect = 7.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 798  GXPPPPPPXP 769
            G P PPPP P
Sbjct: 1855 GSPEPPPPPP 1864


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 12/39 (30%), Positives = 12/39 (30%)
 Frame = -2

Query: 789 PPPPPXPXXXXXXPPPPPPPPXXXXXXPPPPXXXXPPPP 673
           P P P P      PP P  P        P      PP P
Sbjct: 343 PVPVPVPIHCGNFPPRPMGPWISIQEQVPRFRYIGPPTP 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,512
Number of Sequences: 438
Number of extensions: 11910
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32895408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)