Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_B10
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     38   0.003
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    29   1.2  
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    27   3.6  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    27   4.8  
SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|c...    27   4.8  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    26   6.4  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    26   8.4  

>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 682 EYLKKNGRSMFDITFCFSVSMWIHLNNGDNGLREFWNTL 798
           ++L+   +  F I    SVS W+HLNN D G+ +F+  +
Sbjct: 137 DFLRWESKRKFKIILALSVSKWVHLNNHDEGIIKFFGKI 175



 Score = 35.9 bits (79), Expect = 0.008
 Identities = 22/77 (28%), Positives = 39/77 (50%)
 Frame = +1

Query: 379 GNFINYYSFHNVAERINNLHPNMFPTLTEDIYCLDIGCNTGDLTRELYKLLKNLYPQCML 558
           GN+ +YYS       I+     +  +L  +   LDIGCN G ++ ++  +    +     
Sbjct: 7   GNYHSYYSMRGGTSIIDPRLKCLPDSLFYEASVLDIGCNNGTVSAQIASIFGASF----- 61

Query: 559 HILAVDIDSVLINRAQE 609
            +L +DID VLI +A++
Sbjct: 62  -VLGLDIDHVLIQKARK 77


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 11/67 (16%)
 Frame = +1

Query: 625 NIEYTTANVMAKSDRDS--------INEYLK---KNGRSMFDITFCFSVSMWIHLNNGDN 771
           N+E++  N++AK+  +S        +N+ +K   + GRS  D  + FS   +    NGD 
Sbjct: 2   NLEFSFGNLIAKNTENSTKEEGTWEVNKLMKFSSEEGRSSSD-DYMFSSPDFEKAGNGDA 60

Query: 772 GLREFWN 792
            +REF+N
Sbjct: 61  EMREFFN 67


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 364 GAVKFGNFINYYSFHNVAERINNLHPNMFPTLTEDIYCLDIG 489
           G +   N +N+YSF ++AE I  +  +  P   ED + ++ G
Sbjct: 184 GVLNVMNRLNFYSFGHIAENIGAIFESP-PVYVEDPFIVEDG 224


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 451 PTLTEDIYCLDIGCNTGDLTRELYKL-LKNLYPQCMLHILAVDIDSVLINRAQESNT 618
           P L  D   LD+GC TG L+    +   K++Y   M  I+   +  V +N+  +  T
Sbjct: 50  PHLFRDKIVLDVGCGTGILSMFCARAGAKHVYGVDMSEIIHKAVQIVEVNKLSDRIT 106


>SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -3

Query: 530 NSLYNSLVRSPVLQPMSRQYISSVKVGNIFGCKLFILSATL*NE**FIKFPNLTAPGSLP 351
           ++L+N+L++SP L  ++ ++  S+K G I      I+            F  +  PGSLP
Sbjct: 72  SALFNALLQSPYLAALANEFNRSIKEGIICNFTRSIID----------PFSRIVLPGSLP 121


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/40 (25%), Positives = 25/40 (62%)
 Frame = +1

Query: 565 LAVDIDSVLINRAQESNTERNIEYTTANVMAKSDRDSINE 684
           L++D+   ++NR+  +N+++N + T    + +S  +S+ E
Sbjct: 286 LSIDVPLSMLNRSLANNSQKNKKRTPNKPLQESSINSVKE 325


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 583 SQCQRPICATCIEDKGFLIVY 521
           + C+RP C TC  D  F  +Y
Sbjct: 181 TDCKRPTCMTCAIDDMFSSIY 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,623,746
Number of Sequences: 5004
Number of extensions: 78067
Number of successful extensions: 189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)