Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_B09
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.33 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.57 
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.3  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 662 PPXGGGGXXKXXPXPPXGFXXPPPPPP 742
           PP          P PP G   PPPPPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPP 366


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 14/39 (35%), Positives = 15/39 (38%)
 Frame = +3

Query: 651 PXXPPXXGGGGXXKXXPPXXGXFXXPPPPPPXXXSXXXG 767
           P  PP    GG     PP       PPPPPP   +   G
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +2

Query: 677 GGXXKXXPXPPXGFXXPPPPPPXXXXKXXGG 769
           GG     P P      PPPPPP       GG
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +1

Query: 439 GFPPPXXKXPXXKXFXXPPPPP 504
           G PPP    P       PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPP 780


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -1

Query: 783 PPPPXPPLXLXXXXGGGGGGXXXPXGGXG 697
           PPPP  PL      GG  G    P GG G
Sbjct: 99  PPPPRGPLFGPRIGGGHHGPLHGPHGGFG 127


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/17 (64%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
 Frame = +2

Query: 698 PXPPXGFXXP--PPPPP 742
           P PP GF  P  PPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPP 28



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 439 GFPPPXXKXPXXKXFXXPPPPP 504
           G PPP    P  +    PPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPP 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,521
Number of Sequences: 5004
Number of extensions: 37321
Number of successful extensions: 184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)