Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_B08
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm...    30   0.52 
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    28   2.1  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    27   2.7  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    27   2.7  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    27   2.7  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    27   2.7  
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    27   2.7  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    27   3.6  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    27   4.8  
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    26   6.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.3  
SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|ch...    26   8.4  

>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -3

Query: 790 VIYXNXRSLIGTLSNQFECFVNYLGDDSLDHGRSHLLKDFPPVAVREIVDCLRQIT 623
           V+  N  SL+G L        NY     L +  S LLK    + + +I DC+R++T
Sbjct: 29  VLIENWTSLVGHLKTLHSLISNYTNGRELQNEISSLLKQDKELDL-QIQDCMREMT 83


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 411  SPTSVTEHFRSRRVLSYNRLKFKTTQFLRPLTVVSLKSMCKPAWTVFT 268
            SP +V+E   +  VLS +R+  +T+       V   K++C+ +W   T
Sbjct: 1134 SPEAVSELMSTEVVLSIDRIFTQTSSLSGSAIVSFFKALCEVSWDEIT 1181


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -1

Query: 369 LSYNRLKFKTTQFLRPLTVVSLKSMCKPAWTVFTRPTVIGSMVSIPRSAIPAARNGTAF 193
           L+ N+    +T  +  + ++ + S+C P WT F R     + V + +S I    NGT F
Sbjct: 258 LNLNKALIYSTCTISAVLLLIVSSVCIPFWT-FERTLAKLAKVFLLQSGIVLVLNGTMF 315


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 527 EGDRYWHVSDWKHSAEDVSKVEYQFQNLFNGN 622
           EGD +W + DW    +D +  E   +  FNGN
Sbjct: 77  EGD-HWLMPDWSSMPDDETITEDSEEETFNGN 107


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -1

Query: 369 LSYNRLKFKTTQFLRPLTVVSLKSMCKPAWTVFTRPTVIGSMVSIPRSAIPAARNGTAF 193
           L+ N+    +T  +  + ++ + S+C P WT F R     + V + +S I    NGT F
Sbjct: 225 LNLNKALIYSTCTISAVLLLIVSSVCIPFWT-FERTLAKLAKVFLLQSGIVLVLNGTMF 282


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +2

Query: 560 KHSAEDVSKVE-YQFQNLFNGNR-DLAKTIHD-FANSN-WREIFQEVAPPM 700
           K   E+ +K E    + L N N  D+  T+     N N W++IF E APP+
Sbjct: 407 KEEKEETNKTEDVSIEVLDNNNESDIGLTVKKKVENGNAWKQIFSERAPPL 457


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -1

Query: 627 SRLPLNKFWNWYSTLETSSALCFQSLTCQYLSPSTILSSTSRIIFIMMSRILI 469
           S   L+ +WNWY T++     CF +      S    + S   IIF+MM+  L+
Sbjct: 116 SSCKLSMYWNWY-TIDA----CFITKHWHITSKHMFVGSIFGIIFMMMALELV 163


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -2

Query: 518 SPPRLELSSL*CPGF*SCT---FRCLRWVVSVVGHPTCIHQPVS 396
           +PP L L S+    F  C+    R + W+V V+G P  I+  VS
Sbjct: 57  TPPGLYLVSVALSPFIGCSNVSLRLINWLVGVIGLPWLINDIVS 100


>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -1

Query: 153  HGVINFAKSVASDATNAHANRKQRTNIVSYSTKTS 49
            H +     S A   TN HAN KQ+    S S K S
Sbjct: 1106 HAIRTPVSSFAKQTTNKHANLKQKKTHSSKSDKKS 1140


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 560 KHSAEDVSKVEYQFQNLFNGNRDLAKTIHDF 652
           K   E + K    FQ LF   RD+ KTI++F
Sbjct: 19  KAEIEILKKQNELFQPLFEQRRDILKTINNF 49


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 38/177 (21%), Positives = 73/177 (41%)
 Frame = -1

Query: 579 TSSALCFQSLTCQYLSPSTILSSTSRIIFIMMSRILILYFPVPSMGSISSWPPNVYSPTS 400
           TSS+    S +    S S+  SS+S    I+ S       P  +  +ISS   +  SPTS
Sbjct: 243 TSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTS 302

Query: 399 VTEHFRSRRVLSYNRLKFKTTQFLRPLTVVSLKSMCKPAWTVFTRPTVIGSMVSIPRSAI 220
            +    S    S +   F +T     L+  S+ S    + +  +  + I S  S P S+ 
Sbjct: 303 TSSTISSS---SSSSSSFSST-----LSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSS 354

Query: 219 PAARNGTAFCAEDFRQAVSFGRHGVINFAKSVASDATNAHANRKQRTNIVSYSTKTS 49
            ++   ++  +  F   VS       +   S +S ++   ++    +++ S+ + +S
Sbjct: 355 FSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSS 411


>SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/52 (26%), Positives = 21/52 (40%)
 Frame = +2

Query: 509 VEERIVEGDRYWHVSDWKHSAEDVSKVEYQFQNLFNGNRDLAKTIHDFANSN 664
           VEE +   D YW   DW+   E +     +F+  +        +I D  N N
Sbjct: 28  VEEHLRLNDCYWDTHDWRKCTEQME----EFRKCWEKRHGPLPSISDKKNKN 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,320,281
Number of Sequences: 5004
Number of extensions: 66014
Number of successful extensions: 215
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)