Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_B07
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    26   8.7  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    26   8.7  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    26   8.7  

>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 232 IHQKYPYL*NCIKLKP 279
           +H KYPYL  CI + P
Sbjct: 246 VHLKYPYLQQCIVIHP 261


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -3

Query: 343 KHLNYFLLIRSELDRNFFGN-LWVLI*YNFINKDIFDEFQ-QIKLY 212
           KHLN   +I S  D  FF   +W L+  +F++K  F + + Q+ L+
Sbjct: 555 KHLNELPIIAS-FDYTFFVRIIWSLLLISFLSKPTFKQLRCQLSLF 599


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 755 DGXPGDRSPQPNDRAQRVSERGSGRAPNTQTASPRALADSLMQKK 621
           D  P D SP  +  +  + E+G   AP+ +  S R   DS+ +++
Sbjct: 153 DEPPLDASPVSSRASGALGEKGRYIAPHLRAGSGRESGDSMFKRE 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,718
Number of Sequences: 5004
Number of extensions: 42784
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)