Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_B03
(899 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 64 3e-11
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 56 9e-09
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc... 37 0.004
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 33 0.042
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 1.2
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch... 28 2.1
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 28 2.1
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 27 2.7
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo... 27 4.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 4.8
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 26 6.3
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem... 26 6.3
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 26 8.4
>SPAC1687.13c |csn5||COP9/signalosome complex subunit
Csn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 299
Score = 63.7 bits (148), Expect = 3e-11
Identities = 45/150 (30%), Positives = 73/150 (48%)
Frame = +2
Query: 182 EMLQKVRLSSDVALVCMQHALSTEKEEIMGLLIGEVHDNGALVSIVSSVILRRLDKKPDR 361
E + V++S+ L ++H E+MG + G+V GA + I+ S L ++ R
Sbjct: 30 EFFRSVKISAVALLKMLRHVSQGMPLEVMGYVQGKVE--GASLIILDSFALP-VEGTETR 86
Query: 362 VEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASF 541
V EE + +V+ L V + V+GWYHSHP+ W S VD+ TQ Q+ F
Sbjct: 87 VNAHEEAQ-EYSVQYHTLCKSVYRHENVIGWYHSHPNYGCWLSGVDVETQRQNQKYQDPF 145
Query: 542 VGIIFAVFLTDQSTKAPSVQITCFQSINEG 631
V ++ +S ++P V I F++ G
Sbjct: 146 VAVVLD---PKRSLESPYVNIGAFRTYPVG 172
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 55.6 bits (128), Expect = 9e-09
Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 1/144 (0%)
Frame = +2
Query: 197 VRLSSDVALVCMQHALSTEKEEIMGLLIGEVHDNGALVSIVSSVILRRLDKKPDRVEISE 376
V +SS L ++H E+MGL++GE D+ V V + + + V +
Sbjct: 30 VYISSLALLKMLRHGRHGTPMEVMGLMLGEFVDDFT----VRVVDVFAMPQSGTGVSVEA 85
Query: 377 -EQLVQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASFVGII 553
+ + Q + ++ + G+P VVGWYHSHP W S VD+ TQ ++++ V ++
Sbjct: 86 VDPVFQKNMM--DMLKQTGRPEMVVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAVV 143
Query: 554 FAVFLTDQSTKAPSVQITCFQSIN 625
QS K V I F+ IN
Sbjct: 144 VDPI---QSVKG-KVVIDAFRLIN 163
>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 36.7 bits (81), Expect = 0.004
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 437 LRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASFVGIIFA 559
L +GW H+HP T + S VDL T YQ M + I+ A
Sbjct: 334 LLTLGWIHTHPTQTCFMSSVDLHTHCSYQLMLPEAIAIVMA 374
>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 33.5 bits (73), Expect = 0.042
Identities = 20/84 (23%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +2
Query: 254 KEEIMGLLIGEVHDNGALVSIVSSVILR-RLDKKPDRVEISEEQLVQATVRAEELAAEVG 430
K ++G+L+G+ +NG +V++ +S + D+K V + +++ E+ ++
Sbjct: 39 KRRVVGILLGQ--NNGDVVNVANSYAIPFEEDEKNASVWFLDHNFMESM---NEMFKKIN 93
Query: 431 QPLRVVGWYHSHPHITVWPSHVDL 502
++VGWYH+ P + PS +++
Sbjct: 94 ANEKLVGWYHTGPQLR--PSDLEI 115
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.7 bits (61), Expect = 1.2
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = -3
Query: 450 PTTLRGWPTSAANSSALTVA*TSCSS-DISTRSGFLSKRRSITDDTIETSAPLS*TSPIS 274
P+T P+S+ SS +T +S SS S+ S F S +I+ +S P S S +S
Sbjct: 519 PSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIP-STFSSVS 577
Query: 273 KPMISSFSVDNACCIQTKATSDDKRTFCSIS 181
+ SS S ++ + ++S TF S S
Sbjct: 578 SILSSSTSSPSSTSLSISSSSTSS-TFSSAS 607
>SPBC19F8.06c |meu22||amino acid permease, unknown
11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +2
Query: 683 SLLTNNFETLTQLPTILKEEEDEAFNNEISYDDTDDIVTKQHNAAVRTIAIGHIV 847
S +T + ++L LPT ++ED F + +DT D+ K ++ IAIG V
Sbjct: 24 STITCDGKSLNTLPT--PKQEDVEFGVPLQPEDTQDLQRKLKPRHMQMIAIGGCV 76
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 731 LKEEEDEAFNNEISYDDTDDIVTKQHNAAVRTIAIGHI 844
LK ++E F+N++ + + V HN+ TI +G++
Sbjct: 572 LKCLQEEEFDNKVLLEQVESNVQTDHNSPCNTIYVGNL 609
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 27.5 bits (58), Expect = 2.7
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +2
Query: 485 PSHVDLATQSMYQRMDAS-FVGIIFAVFLTDQSTKAPSVQITCFQSINEGASQSRIEIEM 661
P + LA ++Y M S F G+ +V L + +V FQSI SR ++
Sbjct: 377 PFQIALALSNLYHLMGYSAFTGVAASVILFPCNIIVANVYKK-FQSILMKNKDSRSKLMT 435
Query: 662 EIVTNTDSLLTNNFET 709
EI+ N S+ +ET
Sbjct: 436 EIINNIRSIKLYAWET 451
>SPAC23G3.05c |||regulator of G-protein signaling
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 343
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 683 SLLTNNFETLTQLPTILKEEEDEAFNNEI 769
+LLT+N ++LTQ T++ +E+ + F I
Sbjct: 133 NLLTSNIQSLTQESTVISKEQVKMFTQII 161
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.8
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -3
Query: 414 NSSALTVA*TSCSSDISTRSGFLSKRRSITDDTIETSAPLS*TSPISKPMISSFSVD-NA 238
NSS L TSC++ S +G S + T+ ++ S + PI P S+ S D N+
Sbjct: 218 NSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPI--PPTSTSSTDTNS 275
Query: 237 CCIQTKATS 211
+ T +TS
Sbjct: 276 SPLPTTSTS 284
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/75 (21%), Positives = 37/75 (49%)
Frame = +2
Query: 560 VFLTDQSTKAPSVQITCFQSINEGASQSRIEIEMEIVTNTDSLLTNNFETLTQLPTILKE 739
++L +Q+ + S++ S+N ++ + EIE + ++++ N E + + ++
Sbjct: 934 MYLKNQTVEQASLKSE-IASLNSQLAKQKSEIEQAFQGDMEAIIAENLEIMVESQSL--- 989
Query: 740 EEDEAFNNEISYDDT 784
EDE F E +T
Sbjct: 990 -EDEIFRKEKQLAET 1003
>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
membrane translocase Oxa101|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 698 NFETLTQLPTILKEEEDEAFNNEISYDDTDDIVTKQHNAAVRTIAIGHIVD 850
+F T+L I E + E + + D D + QH+ A+R I + H V+
Sbjct: 108 SFRNSTKLSVIQPEMKKELEAIKTAKLDNDQLALNQHSIALRGIYLKHNVN 158
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Frame = +2
Query: 725 TILKEEEDEAFNNEISYDDT----DDIVTKQHNAAVRTIAIGHIVD 850
T + E+EA + ++ +T D++ +++N + +AIGH++D
Sbjct: 969 TSFGDVEEEALSIQLLQKETMLRIDELEIERNNTLLERLAIGHVLD 1014
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,525
Number of Sequences: 5004
Number of extensions: 52046
Number of successful extensions: 163
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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