Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_A24
(902 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 288 6e-79
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 274 8e-75
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 30 0.39
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 30 0.52
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 30 0.52
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 29 0.68
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 28 1.6
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 28 2.1
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 3.6
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 27 3.6
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 27 4.8
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 27 4.8
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 4.8
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 26 6.4
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 26 6.4
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 26 8.4
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 288 bits (707), Expect = 6e-79
Identities = 144/233 (61%), Positives = 176/233 (75%), Gaps = 3/233 (1%)
Frame = +3
Query: 177 KEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVI 356
+E+ V AKLAEQAERY+ M MK V T EL+ EERNLLSVAYKNV+GARR+SWR++
Sbjct: 6 REDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASWRIV 65
Query: 357 SSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLK 530
SSIEQK E G+ + ++ KEYR K+E+EL IC D+L +L+KHLIP A++ ESKVFY K
Sbjct: 66 SSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVFYYK 125
Query: 531 MKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYE 710
MKGDYYRYLAE A GE R + S + Y+ A EI+ A++ PTHPIRLGLALNFSVFYYE
Sbjct: 126 MKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNFSVFYYE 185
Query: 711 ILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDLR**CSCC-XILDXWTSDTQ 866
ILNSPD+AC LAKQAFD+AI+ELD+L+E+SYKD L WTSD +
Sbjct: 186 ILNSPDRACYLAKQAFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAE 238
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 274 bits (673), Expect = 8e-75
Identities = 138/233 (59%), Positives = 173/233 (74%), Gaps = 3/233 (1%)
Frame = +3
Query: 177 KEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVI 356
+E V AKLAEQAERY++M MK+V + +LS EERNLLSVAYKN++GARR+SWR+I
Sbjct: 5 RENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRASWRII 64
Query: 357 SSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLK 530
SSIEQK E G+ R+ + KEYR K+E EL +IC+DVL +L+KHLIP A+ ESKVFY K
Sbjct: 65 SSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKVFYYK 124
Query: 531 MKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYE 710
MKGDYYRYLAE GE + S +AY+ A +I+ A++ PT P+RLGLALNFSVFYYE
Sbjct: 125 MKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFSVFYYE 184
Query: 711 ILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDLR**CSCC-XILDXWTSDTQ 866
IL+SP+ AC LAKQ FD+AI+ELD+L+E+SYKD L WTSD +
Sbjct: 185 ILDSPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAE 237
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 30.3 bits (65), Expect = 0.39
Identities = 21/91 (23%), Positives = 39/91 (42%)
Frame = +3
Query: 180 EELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVIS 359
EEL+ R + + Y+ MA + E E ++ + LLS Y N +R+ +
Sbjct: 3011 EELM-RERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDNEAYQAELFYRLSN 3069
Query: 360 SIEQKTEGSERKQQMAKEYRVKVEKELREIC 452
+E+ + EY +E+ L++ C
Sbjct: 3070 CVEKVLHNKISITDLKTEYEEILEQTLKKEC 3100
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 29.9 bits (64), Expect = 0.52
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 4/137 (2%)
Frame = +3
Query: 297 LLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYR-VKVEKELR-EICYDVLGL 470
L+S +N A RS + + I + S + ++ + YR VK K L +IC+ +
Sbjct: 968 LVSYVRRNAETAERS--QALPFITRNL-ASIKSHELHEAYRLVKANKILEAQICFRSIIY 1024
Query: 471 LDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATG-ETRHSVVEDSQKAYQDAFEISKAK 647
L L A++ E + + RY+ ++ E R ED+++A + ++ + A
Sbjct: 1025 LA--LTTVANSEEEADEISALIDECCRYIVALSCELERRRLGEEDTKRALELSYYFASAD 1082
Query: 648 MQPTHP-IRLGLALNFS 695
+QP H I L LA+N S
Sbjct: 1083 LQPMHSIIALRLAINAS 1099
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 29.9 bits (64), Expect = 0.52
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +3
Query: 192 QRAKLAEQAERYDDMAAAMKEVT--ETGVELSNEERN-LLSVAYKNVVGARRSSWRVIS 359
++ K ++ E + ++ + +K V+ ET E+SN+E N LL + YK V S+W S
Sbjct: 11 EQGKFNDKEEGFSNLKS-LKHVSHSETDFEVSNDEDNQLLELGYKPVFKREFSTWATFS 68
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 29.5 bits (63), Expect = 0.68
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = +3
Query: 174 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV 353
+K+E QR + Q R D M + +G S+ + SV+ + +R S+
Sbjct: 320 EKQEKEQRLFMLAQKAREDRMG---RNAASSGP--SHAKPRSTSVSSEERSRSRAGSFSH 374
Query: 354 ISSIEQKTEGSE---RKQQMAKEYRVKVEKELR 443
S E + E SE R+Q++ +E R + EK+LR
Sbjct: 375 HSESENEDEDSEAFRRRQELRRERRRQAEKDLR 407
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 28.3 bits (60), Expect = 1.6
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Frame = +3
Query: 366 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKM-KGD 542
E E+ Q++A+ Y+V + +LRE YD LG + +P A ++ F+ + GD
Sbjct: 43 ENPEAAREKFQKLAEAYQVLSDPKLRE-KYDKLGKVG--AVPDAGFEDAFEFFKNLFGGD 99
Query: 543 YYR-YLAEVATGETRHSVV--EDSQKAYQDAFEISKAKMQ 653
+R Y+ E+ + ++ E KA +D E SK ++Q
Sbjct: 100 SFRDYVGELNLLKELCKMINEEPELKAIEDT-EESKKQLQ 138
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.9 bits (59), Expect = 2.1
Identities = 9/41 (21%), Positives = 21/41 (51%)
Frame = -3
Query: 795 LRSMCPVRRWHRRKPVWRVDTPCLANLISHNKRLRNLTPDP 673
LR + P+ +W R++ +W + P + + ++ + P P
Sbjct: 119 LRDVTPINQWKRKRSLWDIKPPGYELVTADQAKMSGVFPLP 159
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +3
Query: 468 LLDKHLIPKASNPESKVFYLKMKGDYYR---YLAEVATGETRHSVVEDS 605
+++K IP++ E+K Y + GD+ +L E A E H V+ D+
Sbjct: 1608 MIEKLCIPESWLNEAKALYARYVGDHLNELYFLQEAALYEDAHKVLLDT 1656
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 27.1 bits (57), Expect = 3.6
Identities = 20/73 (27%), Positives = 31/73 (42%)
Frame = +3
Query: 597 EDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAE 776
E +K + + + K + T+P +GL+ F Y + D A + D+
Sbjct: 46 EKKKKKKKKSSKKKKTPQEQTNPPTVGLSKIFVNKKYPVGEVCDYAEDNLWRTTDEEKRA 105
Query: 777 LDTLNEDSYKDLR 815
LD N D Y DLR
Sbjct: 106 LDRQNFDQYNDLR 118
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 315 KNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVE 431
KN+ S+ R +SS + K +E + M +Y K+E
Sbjct: 350 KNLENDEESTLRALSSFQSKIRNAEDEDVMDSQYGSKIE 388
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 111 FSPSDK-GISELVLFHRPRCPVDKEELVQRAKLAEQAERYDDMAAAMKEVTE 263
FSP +K + +L LFH + P KE + + + DD A V+E
Sbjct: 162 FSPPEKPSMKDLALFHGNKSPSSKETIPKVSNSNSSDTSTDDQAYLNVSVSE 213
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 4.8
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
Frame = +3
Query: 174 DKEELVQRAKLAEQA-ERYDDMAAAMK--EVTETGVELSNEERNLLSVAYKNVVGARRSS 344
D ++RA A QA E+ + + +K E+ +L LL V + + R S
Sbjct: 265 DVRSRIERA--ARQAREKNEKLLQNVKTSEIPINAADLEGINPELLPVIEEEIRSFRDQS 322
Query: 345 WRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 494
+K + + KEY K +++LR+ D+ LL KH I +
Sbjct: 323 ---AMKKREKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKHRISR 369
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 26.2 bits (55), Expect = 6.4
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +3
Query: 150 FHRPRCPVDKEELVQR--AKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNV 323
F+R V++EE ++ A AE+A+ + +AAA E+T++ + + N+L+ A
Sbjct: 205 FYRDPEEVEREEEAKKAAAAAAEEAQVEEAVAAAEFEITDSAA--GSVDPNVLAAATAGQ 262
Query: 324 VG 329
VG
Sbjct: 263 VG 264
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 26.2 bits (55), Expect = 6.4
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 727 TRRVNSPNRLSTMPSPNWTH*TKIRTKIYVNNAVAAXYLT 846
T R N+P+R + SP T IYV N +A YLT
Sbjct: 57 THRENNPSRSTDNSSPFLIKLLISFTPIYVLNVLAICYLT 96
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 303 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKE 437
S +Y + G S W+ I ++ K+ G +R ++ Y +KE
Sbjct: 61 SFSYPFLKGKSDSPWQAIQLLDFKSSGQQRAAYYSERYHSFRDKE 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,351,917
Number of Sequences: 5004
Number of extensions: 68628
Number of successful extensions: 233
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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