Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_A21
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces...   156   5e-39
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe...   156   5e-39
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb...   156   5e-39
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    50   3e-07
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   8.5  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    26   8.5  

>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score =  156 bits (378), Expect = 5e-39
 Identities = 73/83 (87%), Positives = 81/83 (97%)
 Frame = +1

Query: 136 AKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVXYTE 315
           AKRHRK+LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR+VLK+FLENVIRDAV YTE
Sbjct: 16  AKRHRKILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTE 75

Query: 316 HAKRKTVTAMDVVYALKRQGRTL 384
           HAKRKTVT++DVVY+LKRQGRT+
Sbjct: 76  HAKRKTVTSLDVVYSLKRQGRTI 98


>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score =  156 bits (378), Expect = 5e-39
 Identities = 73/83 (87%), Positives = 81/83 (97%)
 Frame = +1

Query: 136 AKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVXYTE 315
           AKRHRK+LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR+VLK+FLENVIRDAV YTE
Sbjct: 16  AKRHRKILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTE 75

Query: 316 HAKRKTVTAMDVVYALKRQGRTL 384
           HAKRKTVT++DVVY+LKRQGRT+
Sbjct: 76  HAKRKTVTSLDVVYSLKRQGRTI 98


>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score =  156 bits (378), Expect = 5e-39
 Identities = 73/83 (87%), Positives = 81/83 (97%)
 Frame = +1

Query: 136 AKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVXYTE 315
           AKRHRK+LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR+VLK+FLENVIRDAV YTE
Sbjct: 16  AKRHRKILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTE 75

Query: 316 HAKRKTVTAMDVVYALKRQGRTL 384
           HAKRKTVT++DVVY+LKRQGRT+
Sbjct: 76  HAKRKTVTSLDVVYSLKRQGRTI 98


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 24/78 (30%), Positives = 42/78 (53%)
 Frame = +1

Query: 139 KRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVXYTEH 318
           K  R+  + +   + +  IR+LA     K+I+G + EE  +  ++F + +  D   + +H
Sbjct: 373 KPKRRYSKSSTLVLPETNIRKLANSYSQKKIAGSVIEELTTASELFFKQIANDLSAFADH 432

Query: 319 AKRKTVTAMDVVYALKRQ 372
           A RKT+   DVV  +KRQ
Sbjct: 433 AHRKTIDTQDVVLLMKRQ 450


>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 168 YSRNNEACHSKIGATRRRQTYIRPDLRGNTQRSKGFSRERYPGRGXLHR 314
           Y RN E  +  +  T    T++RP     +QR  G  ++R   +   HR
Sbjct: 128 YVRNGEVLYHLVSTTGG-DTFLRPKFWPQSQRISGMLKKRITMKENKHR 175


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 244 YEETRSVLKVFLENVIRDAVXYTEHAKRKT-VTAMDVVY 357
           + E R+ LK   EN+IR+   Y E A + T  T +D  +
Sbjct: 46  FAERRNFLKALKENIIRNQDKYAEIACKDTGKTLVDAAF 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,813
Number of Sequences: 5004
Number of extensions: 34230
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)