Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_A17
         (920 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.0  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 410  FDLPNQNELRDDVKKFVEKLGNEEDDKLAVISDVESIITFYCKS 541
            F    +NE    +KK +EK  N +  +  V +  E  + F CK+
Sbjct: 1727 FHCMEKNEAAMKLKKRIEKGANPDLSQKPVSTTEELTVPFVCKA 1770


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -1

Query: 260 LVLSTKYHRRLLP 222
           L+LST+Y +RLLP
Sbjct: 68  LLLSTRYDKRLLP 80


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -1

Query: 260 LVLSTKYHRRLLP 222
           L+LST+Y +RLLP
Sbjct: 68  LLLSTRYDKRLLP 80


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -1

Query: 260 LVLSTKYHRRLLP 222
           L+LST+Y +RLLP
Sbjct: 68  LLLSTRYDKRLLP 80


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -1

Query: 260 LVLSTKYHRRLLP 222
           L+LST+Y +RLLP
Sbjct: 68  LLLSTRYDKRLLP 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,911
Number of Sequences: 438
Number of extensions: 4913
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)